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Showing :
htseqcounts
•
reset
2
votes
4
replies
3.4k
views
Error in DESeqDataSetFromHTSeqCount: Gene IDs (first column) differ between files.
chipseq
deseq2
htseqcounts
updated 14 months ago by
mhashan.j
▴ 10 • written 7.2 years ago by
JunLVI
▴ 40
1
vote
6
replies
1.9k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
sakura.nussbaum
▴ 10
0
votes
3
replies
1.9k
views
how to read htseq-count
edger
htseqcounts
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
Bioinformatics
▴ 30
1
vote
1
reply
1.1k
views
RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
edger
htseqcounts
rnaseq
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
romsdahl
• 0
0
votes
7
replies
1.7k
views
PCA results different from th same sample but different counting method
deseq2
pca
tximportdata
htseqcounts
updated 7.9 years ago by
Michael Love
42k • written 7.9 years ago by
jarod_v6@libero.it
▴ 40
1
vote
4
replies
1.8k
views
GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2
goseq
htseqcounts
rnaseq
plant
updated 8.0 years ago by
Gordon Smyth
50k • written 8.0 years ago by
Ben Mansfeld
• 0
3
votes
7
replies
3.3k
views
read counts for each gene for edgeR
edger
htseqcounts
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
mictadlo
▴ 10
1
vote
2
replies
4.3k
views
Length of 'group' must equal number of columns in 'counts'
htseqcounts
edger
updated 19 months ago by
Randy
• 0 • written 6.7 years ago by
mictadlo
▴ 10
1
vote
1
reply
2.0k
views
Difference between SummarizeOverlaps and HTSeq
R
summarizeoverlaps
htseqcounts
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
Walter F. Baumann
▴ 10
0
votes
4
replies
1.3k
views
Normalise counts when tumour samples have normal tissue contamination.
deseq2
deseq
edgeR
rnaseq
htseqcounts
6.3 years ago
Deepali
• 0
0
votes
0
replies
1.1k
views
DEXSeq error: erro in dexseq_count.py
dexseq_count
dexseq
htseqcounts
7.7 years ago
as1023
• 0
0
votes
5
replies
2.3k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 10 months ago by
Yang Liao
▴ 380 • written 7.0 years ago by
courtney.stairs
• 0
2
votes
2
replies
1.2k
views
Why does total unique map not equal to library size?
htseqcounts
star
rnaseq
6.7 years ago
Ahdee
▴ 50
13 results • Page
1 of 1
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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