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htseqcounts
•
reset
2
votes
4
replies
3.4k
views
Error in DESeqDataSetFromHTSeqCount: Gene IDs (first column) differ between files.
chipseq
deseq2
htseqcounts
updated 14 months ago by
mhashan.j
▴ 10 • written 7.2 years ago by
JunLVI
▴ 40
1
vote
6
replies
1.9k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
sakura.nussbaum
▴ 10
0
votes
3
replies
1.9k
views
how to read htseq-count
edger
htseqcounts
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
Bioinformatics
▴ 30
1
vote
1
reply
1.1k
views
RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
edger
htseqcounts
rnaseq
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
romsdahl
• 0
0
votes
7
replies
1.7k
views
PCA results different from th same sample but different counting method
deseq2
pca
tximportdata
htseqcounts
updated 7.9 years ago by
Michael Love
42k • written 7.9 years ago by
jarod_v6@libero.it
▴ 40
1
vote
4
replies
1.8k
views
GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2
goseq
htseqcounts
rnaseq
plant
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
Ben Mansfeld
• 0
3
votes
7
replies
3.3k
views
read counts for each gene for edgeR
edger
htseqcounts
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
mictadlo
▴ 10
1
vote
2
replies
4.3k
views
Length of 'group' must equal number of columns in 'counts'
htseqcounts
edger
updated 19 months ago by
Randy
• 0 • written 6.7 years ago by
mictadlo
▴ 10
1
vote
1
reply
2.0k
views
Difference between SummarizeOverlaps and HTSeq
R
summarizeoverlaps
htseqcounts
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
Walter F. Baumann
▴ 10
0
votes
4
replies
1.3k
views
Normalise counts when tumour samples have normal tissue contamination.
deseq2
deseq
edgeR
rnaseq
htseqcounts
6.2 years ago
Deepali
• 0
0
votes
0
replies
1.1k
views
DEXSeq error: erro in dexseq_count.py
dexseq_count
dexseq
htseqcounts
7.7 years ago
as1023
• 0
0
votes
5
replies
2.3k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts
SAM
htseqcounts
updated 10 months ago by
Yang Liao
▴ 380 • written 7.0 years ago by
courtney.stairs
• 0
2
votes
2
replies
1.2k
views
Why does total unique map not equal to library size?
htseqcounts
star
rnaseq
6.7 years ago
Ahdee
▴ 50
13 results • Page
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Replies
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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