Bioconductor Illuminahumanmethylationepicmanifest

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 13 months ago by James W. MacDonald 68k • written 13 months ago by rae.alshammari ▴ 10

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IlluminaHumanMethylationEPICmanifest ChAMP annotation

updated 22 months ago by James W. MacDonald 68k • written 22 months ago by Matilda • 0

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ENmix IlluminaHumanMethylationEPICmanifest

updated 10 months ago by James W. MacDonald 68k • written 2.9 years ago by Daphna • 0

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Illumina minfi IlluminaHumanMethylationEPICmanifest

2.9 years ago octaviompa • 0

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IlluminaHumanMethylationEPICmanifest minfi conumee

updated 3.9 years ago by volker hovestadt ▴ 40 • written 4.0 years ago by theresa.walder • 0

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IlluminaHumanMethylationEPICmanifest

updated 3.1 years ago by Di • 0 • written 4.0 years ago by poojitha.stemcell ▴ 10

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illuminaio illuminahumanmethylationepicmanifest minfi

updated 7.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 7.2 years ago by Giovanni Calice ▴ 160

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illuminahumanmethylationepicanno.ilmn10b.hg19 illuminahumanmethylationepicmanifest minfi limma 850k

8.0 years ago ceciliebucher • 0

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minfi methylation illuminahumanmethylationepicmanifest illumina

9.0 years ago rasii • 0

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minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19

updated 9.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.0 years ago by igor ▴ 50

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k