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illuminaio
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5
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5
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2.3k
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Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .bgx file
IlluminaHumanMethylation450BeadChip
illuminaio
normalize450K
2.1 years ago • updated 2.0 years ago
Sarah
• 0
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.2 years ago
Jojo
• 0
0
votes
2
replies
1.0k
views
Question about Illuminaio
illuminaio
illumina human ht-12 v4
gene expression
micorarray
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.1 years ago by
makoouji
• 0
0
votes
2
replies
1.3k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio
illuminahumanmethylationepicmanifest
minfi
updated 6.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 6.3 years ago by
Giovanni Calice
▴ 160
0
votes
1
reply
1.8k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 7.0 years ago by
Guido Hooiveld
★ 3.9k
1
vote
2
replies
1.1k
views
read.idat and empty Symbols
illuminaio
limma
7.4 years ago • updated 3.5 years ago
h.mon
• 0
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
7.8 years ago
m.van_iterson
▴ 20
1
vote
2
replies
2.0k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
8.1 years ago
Adam
• 0
4
votes
10
replies
2.2k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 8.6 years ago by
Mike Smith
★ 6.5k • written 8.7 years ago by
willj
▴ 30
1
vote
5
replies
2.9k
views
Error with read.idat() function in illuminaio package
illuminaio
normalization
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Stephen Piccolo
▴ 590
1
vote
4
replies
2.6k
views
read.idat manifest error
limma
illuminaio
illumina human WG6v2
updated 8.9 years ago by
Matthew Ritchie
▴ 1000 • written 8.9 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
0
votes
10
replies
2.2k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
9.2 years ago
lacion
• 0
0
votes
1
reply
2.3k
views
Reading IDAT files with illuminaio
SNP
illuminaio
SNP
illuminaio
updated 10.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.4 years ago by
Mike Smith
★ 6.5k
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
10.4 years ago
Kasper Daniel Hansen
★ 6.5k
3
votes
9
replies
5.7k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Sean Davis
21k
15 results • Page
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Replies
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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