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illuminaio
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0
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10
replies
2.2k
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Error when using readIDAT() from illuminaio
illuminaio
idat
9.3 years ago • updated 9.2 years ago
lacion
• 0
4
votes
10
replies
2.2k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 8.7 years ago by
Mike Smith
★ 6.5k • written 8.7 years ago by
willj
▴ 30
3
votes
9
replies
5.7k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.5 years ago by
Gordon Smyth
50k • written 10.5 years ago by
Sean Davis
21k
5
votes
5
replies
2.3k
views
Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .bgx file
IlluminaHumanMethylation450BeadChip
illuminaio
normalize450K
2.1 years ago
Sarah
• 0
1
vote
5
replies
2.9k
views
Error with read.idat() function in illuminaio package
illuminaio
normalization
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 8.8 years ago by
Stephen Piccolo
▴ 590
1
vote
4
replies
2.6k
views
read.idat manifest error
limma
illuminaio
illumina human WG6v2
updated 8.9 years ago by
Matthew Ritchie
▴ 1000 • written 8.9 years ago by
Gabriel Nathan Kaufman, Mr
▴ 60
2
votes
4
replies
1.3k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.3 years ago
Jojo
• 0
0
votes
2
replies
1.0k
views
Question about Illuminaio
illuminaio
illumina human ht-12 v4
gene expression
micorarray
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
makoouji
• 0
1
vote
2
replies
1.1k
views
read.idat and empty Symbols
illuminaio
limma
7.5 years ago • updated 3.6 years ago
h.mon
• 0
0
votes
2
replies
1.3k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio
illuminahumanmethylationepicmanifest
minfi
updated 6.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 6.4 years ago by
Giovanni Calice
▴ 160
1
vote
2
replies
1.6k
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
7.9 years ago
m.van_iterson
▴ 20
1
vote
2
replies
2.1k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma
lumi
illuminaio
illimina 450k methylation
microarray
8.1 years ago
Adam
• 0
0
votes
1
reply
1.8k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 7.0 years ago by
Guido Hooiveld
★ 4.0k
0
votes
1
reply
2.3k
views
Reading IDAT files with illuminaio
SNP
illuminaio
SNP
illuminaio
updated 10.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.4 years ago by
Mike Smith
★ 6.5k
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization
limma
beadarray
lumi
illuminaio
Normalization
limma
beadarray
lumi
10.5 years ago
Kasper Daniel Hansen
★ 6.5k
15 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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