Bioconductor InSilicoMerging

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affy insilicomerging

6.7 years ago pratikshasharma47 • 0

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inSilicoMerging microarray affymetrix microarrays

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by Adam_M • 0

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insilicomerging error insilicodb expressionset

8.9 years ago andreas.pittroff • 0

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MDSplot geneexpression insilicomerging

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Shamim Sarhadi ▴ 20

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inSilicoMerging doubleannotation affymetrix microarrays limma inSilicoDB

10.3 years ago svlachavas ▴ 840

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combine expresiondataset insilicomerging

10.4 years ago alakatos ▴ 130

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insilicomerging batcheffect limma differential gene expression bioconductor

updated 10.4 years ago by Aaron Lun ★ 29k • written 10.4 years ago by svlachavas ▴ 840

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insilicomerging

10.5 years ago carol white ▴ 680

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frma bioconductor batcheffect Primeview insilicomerging

updated 10.7 years ago by Matthew McCall ▴ 830 • written 10.7 years ago by svlachavas ▴ 840

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inSilicoMerging

11.1 years ago Li Liu ▴ 100

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inSilicoMerging inSilicoMerging

updated 11.6 years ago by Quentin De Clerck ▴ 10 • written 11.6 years ago by François Lefebvre ▴ 50

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inSilicoMerging inSilicoMerging

updated 12.4 years ago by Dan Tenenbaum ★ 8.2k • written 12.4 years ago by Li Liu ▴ 100

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Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

12.5 years ago Ed Siefker ▴ 230

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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