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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
6.6 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.5k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
Adam_M
• 0
0
votes
1
reply
1.7k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
8.8 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.9k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.4k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
10.2 years ago
svlachavas
▴ 840
1
vote
2
replies
2.7k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
10.3 years ago
alakatos
▴ 130
6
votes
4
replies
4.6k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 10.3 years ago by
Aaron Lun
★ 29k • written 10.3 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.2k
views
problem with insilicoMerging
insilicomerging
10.4 years ago
carol white
▴ 680
1
vote
5
replies
2.5k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 10.5 years ago by
Matthew McCall
▴ 830 • written 10.5 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
11.0 years ago
Li Liu
▴ 100
0
votes
1
reply
1.6k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 11.5 years ago by
Quentin De Clerck
▴ 10 • written 11.5 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.9k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 12.2 years ago by
Dan Tenenbaum
★ 8.2k • written 12.2 years ago by
Li Liu
▴ 100
0
votes
2
replies
2.2k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
12.4 years ago
Ed Siefker
▴ 230
13 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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