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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
6.5 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.5k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
Adam_M
• 0
0
votes
1
reply
1.7k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
8.7 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.9k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.3k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
10.1 years ago
svlachavas
▴ 840
1
vote
2
replies
2.7k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
10.2 years ago
alakatos
▴ 130
6
votes
4
replies
4.5k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 10.2 years ago by
Aaron Lun
★ 29k • written 10.2 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.2k
views
problem with insilicoMerging
insilicomerging
10.3 years ago
carol white
▴ 680
1
vote
5
replies
2.5k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 10.5 years ago by
Matthew McCall
▴ 830 • written 10.5 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
10.9 years ago
Li Liu
▴ 100
0
votes
1
reply
1.6k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 11.4 years ago by
Quentin De Clerck
▴ 10 • written 11.4 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.9k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 12.2 years ago by
Dan Tenenbaum
★ 8.2k • written 12.2 years ago by
Li Liu
▴ 100
0
votes
2
replies
2.2k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
12.3 years ago
Ed Siefker
▴ 230
13 results • Page
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error
by
James W. MacDonald
68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
by
Gordon Smyth
53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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