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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.9 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.4k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
Adam_M
• 0
0
votes
1
reply
1.6k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
8.1 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.8k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.1k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
9.5 years ago
svlachavas
▴ 840
1
vote
2
replies
2.6k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
9.6 years ago
alakatos
▴ 130
6
votes
4
replies
4.3k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 9.6 years ago by
Aaron Lun
★ 28k • written 9.6 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.1k
views
problem with insilicoMerging
insilicomerging
9.7 years ago
carol white
▴ 680
1
vote
5
replies
2.3k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.9 years ago by
Matthew McCall
▴ 830 • written 9.9 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.3k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
10.3 years ago
Li Liu
▴ 100
0
votes
1
reply
1.5k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.8 years ago by
Quentin De Clerck
▴ 10 • written 10.8 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.7k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.6 years ago by
Li Liu
▴ 100
0
votes
2
replies
2.0k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
11.7 years ago
Ed Siefker
▴ 230
13 results • Page
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Comment: Conumee for EPIC and EPICv2 copy number
by
Adam
• 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient.
by
canarias
• 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Comment: Gene Set Enrichment Analysis in Bioconductor course
by
info
▴ 10
If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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