Bioconductor InSilicoMerging

Showing : inSilicoMerging • reset

votes

replies

872

views

affy insilicomerging

6.6 years ago pratikshasharma47 • 0

vote

replies

1.5k

views

inSilicoMerging microarray affymetrix microarrays

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by Adam_M • 0

votes

1.7k

views

insilicomerging error insilicodb expressionset

8.8 years ago andreas.pittroff • 0

votes

replies

1.9k

views

MDSplot geneexpression insilicomerging

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Shamim Sarhadi ▴ 20

votes

replies

2.4k

views

inSilicoMerging doubleannotation affymetrix microarrays limma inSilicoDB

10.2 years ago svlachavas ▴ 840

vote

replies

2.7k

views

combine expresiondataset insilicomerging

10.3 years ago alakatos ▴ 130

votes

replies

4.6k

views

insilicomerging batcheffect limma differential gene expression bioconductor

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by svlachavas ▴ 840

votes

replies

1.2k

views

insilicomerging

10.4 years ago carol white ▴ 680

vote

replies

2.5k

views

frma bioconductor batcheffect Primeview insilicomerging

updated 10.5 years ago by Matthew McCall ▴ 830 • written 10.5 years ago by svlachavas ▴ 840

votes

replies

1.4k

views

inSilicoMerging

11.0 years ago Li Liu ▴ 100

votes

1.6k

views

inSilicoMerging inSilicoMerging

updated 11.5 years ago by Quentin De Clerck ▴ 10 • written 11.5 years ago by François Lefebvre ▴ 50

votes

replies

2.9k

views

inSilicoMerging inSilicoMerging

updated 12.2 years ago by Dan Tenenbaum ★ 8.2k • written 12.2 years ago by Li Liu ▴ 100

votes

replies

2.2k

views

Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma

12.4 years ago Ed Siefker ▴ 230

13 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

Awards • All