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inSilicoMerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
6.6 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.5k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
Adam_M
• 0
0
votes
1
reply
1.8k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
8.8 years ago
andreas.pittroff
• 0
0
votes
3
replies
2.0k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.4k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
10.3 years ago
svlachavas
▴ 840
1
vote
2
replies
2.8k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
10.3 years ago
alakatos
▴ 130
6
votes
4
replies
4.6k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 10.4 years ago by
Aaron Lun
★ 29k • written 10.4 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.2k
views
problem with insilicoMerging
insilicomerging
10.5 years ago
carol white
▴ 680
1
vote
5
replies
2.6k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 10.6 years ago by
Matthew McCall
▴ 830 • written 10.6 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
11.0 years ago
Li Liu
▴ 100
0
votes
1
reply
1.6k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 11.6 years ago by
Quentin De Clerck
▴ 10 • written 11.6 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.9k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Li Liu
▴ 100
0
votes
2
replies
2.3k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
12.5 years ago
Ed Siefker
▴ 230
13 results • Page
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Comment: Senior Teaching Fellow (MSc Computational Biomedicine)
by
eja.ger.m
• 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
ATpoint
★ 5.0k
Since the donor effect is so clear I assume that a paired analysis within donor is strictly necessary to get DEGs, and therefore one would …
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
forgot to attach some other plots, which may be informative... RLE plot ![enter image description here][1] pvalue distribution ![enter …
Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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