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interactionset
•
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0
votes
3
replies
1.1k
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Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet
GInteractions
14 months ago
Sarah
▴ 10
1
vote
5
replies
1.7k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic
interactionset
8.6 years ago
Vivek.b
▴ 100
2
votes
1
reply
1.5k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
hwick1
▴ 20
2
votes
1
reply
1.6k
views
Error to rename seqlevels in Granges interactions
interactionset
granges
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.6k
views
Visualizing 4c-seq as arc
genomicinteractions
gviz
interactionset
updated 6.3 years ago by
liz.ingsimmons
▴ 140 • written 6.3 years ago by
ferbecneu
• 0
0
votes
1
reply
1.1k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
girardot
• 0
0
votes
1
reply
1.2k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
lklei001
• 0
0
votes
2
replies
1.5k
views
Converting a GInteractions object to a dataframe
InteractionSet
3.7 years ago
noag
• 0
1
vote
12
replies
2.0k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
13 months ago • updated 12 months ago
paria.alipour
• 0
2
votes
1
reply
1.3k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet
structural variants
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
tangming2005
▴ 200
0
votes
3
replies
1.1k
views
trying to generate an object from a virtual class ("DataFrame")
InteractionSet
BuildReport
2.2 years ago • updated 2.1 years ago
martin.grigorov
▴ 10
1
vote
0
replies
724
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet
subsetByOverlaps
GenomicInteractions
20 months ago
LaureTomas
▴ 10
12 results • Page
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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
by
Gordon Smyth
52k
I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…
Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
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Devin
▴ 10
Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…
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Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
Answer: Using TPM from tximport of Salmon output for singscore
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