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iranges
•
reset
0
votes
0
replies
2.0k
views
working with genome-wide phastCons scores
BSgenome
convert
BSgenome
rtracklayer
IRanges
charm
BSgenome
convert
BSgenome
rtracklayer
12.0 years ago
Robert Castelo
★ 3.4k
0
votes
2
replies
7.2k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP
Sequencing
Coverage
Alignment
Cancer
Biostrings
PROcess
IRanges
GenomicRanges
SNP
updated 12.0 years ago by
Michael Lawrence
★ 11k • written 12.0 years ago by
Hervé Pagès
16k
0
votes
4
replies
2.4k
views
Getting first or last hit from a Hits object
IRanges
GenomicRanges
IRanges
GenomicRanges
updated 12.0 years ago by
Michael Lawrence
★ 11k • written 12.0 years ago by
Peter Hickey
▴ 760
0
votes
2
replies
1.4k
views
Fwd: BioStrings PairwiseAlignment deletion() insertion() function
Alignment
Cancer
Biostrings
IRanges
Alignment
Cancer
Biostrings
IRanges
updated 12.1 years ago by
Marcin Imielinski
▴ 30 • written 12.1 years ago by
Hervé Pagès
16k
0
votes
2
replies
1.5k
views
'version' is missing error when running makeTxDbPackageFromUCSC
TranscriptDb
IRanges
TranscriptDb
IRanges
updated 12.2 years ago by
Dan Tenenbaum
★ 8.2k • written 12.2 years ago by
Michael Steeves
▴ 40
0
votes
0
replies
851
views
Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle
Cancer
Biostrings
biomaRt
IRanges
GenomicRanges
Cancer
Biostrings
biomaRt
IRanges
12.2 years ago
Martin Morgan
25k
0
votes
3
replies
3.3k
views
MEDIPS, GRanges, IRanges error processing BAM file
Alignment
BSgenome
PROcess
BSgenome
IRanges
MEDIPS
Alignment
BSgenome
PROcess
BSgenome
updated 12.2 years ago by
Lukas Chavez
▴ 570 • written 12.2 years ago by
Jonathan Ellis
▴ 40
0
votes
2
replies
1.4k
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 12.2 years ago by
Tim Triche
★ 4.2k • written 12.2 years ago by
Michael Lawrence
★ 11k
0
votes
4
replies
1.7k
views
IRanges::unlist in package
rtracklayer
IRanges
GenomicFeatures
Rsamtools
rtracklayer
IRanges
GenomicFeatures
Rsamtools
updated 12.3 years ago by
James W. MacDonald
68k • written 12.3 years ago by
Marco Blanchette
▴ 220
0
votes
16
replies
2.4k
views
IRanges is broken in Cygwin (mingw/math.h)
IRanges
IRanges
updated 12.3 years ago by
Michael Lawrence
★ 11k • written 12.3 years ago by
enricoferrero
▴ 680
0
votes
2
replies
1.4k
views
transport mcols from one GRange obejct to another
IRanges
IRanges
updated 12.5 years ago by
Martin Morgan
25k • written 12.5 years ago by
Wim Kreinen
▴ 100
0
votes
1
reply
3.0k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 12.7 years ago by
Dan Tenenbaum
★ 8.2k • written 12.7 years ago by
Wim Kreinen
▴ 100
0
votes
3
replies
1.2k
views
startup options
IRanges
IRanges
updated 12.7 years ago by
Benilton Carvalho
★ 4.3k • written 12.7 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
819
views
Expected value of finding a sequence
Biostrings
IRanges
Biostrings
IRanges
12.7 years ago
Tim Smith
★ 1.1k
1
vote
0
replies
2.1k
views
pileup coverage from BAM file
Coverage
Cancer
IRanges
GenomicRanges
Coverage
Cancer
IRanges
GenomicRanges
12.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.0k
views
question about how to get ranges in Biostrings
Cancer
IRanges
Gviz
Cancer
IRanges
Gviz
12.7 years ago
Hervé Pagès
16k
0
votes
2
replies
4.0k
views
Generate a GRangesList from a classical list of GRangesObjects
IRanges
IRanges
updated 12.7 years ago by
Tim Triche
★ 4.2k • written 12.7 years ago by
Hermann Norpois
▴ 170
0
votes
0
replies
991
views
Confusion over inconsistencies with showMethods('Rle') when loaded via GenomicRanges
GO
IRanges
GO
IRanges
12.8 years ago
Stephanie M. Gogarten
▴ 890
0
votes
4
replies
2.1k
views
Using GenomicRanges with table data
IRanges
GenomicRanges
IRanges
GenomicRanges
updated 12.8 years ago by
Steve Lianoglou
★ 13k • written 12.8 years ago by
Tom Oates
▴ 60
0
votes
1
reply
1.6k
views
easyRNAseq remove overlapping features
Annotation
BSgenome
BSgenome
IRanges
easyRNASeq
Annotation
BSgenome
BSgenome
IRanges
updated 12.8 years ago by
delhomme@embl.de
★ 1.2k • written 12.8 years ago by
Vince Schulz
▴ 160
0
votes
28
replies
3.8k
views
countMatches() (was: table for GenomicRanges)
Cancer
IRanges
Cancer
IRanges
updated 12.8 years ago by
Michael Lawrence
★ 11k • written 12.8 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.3k
views
IRanges install error with parallel/mcmapply
Coverage
IRanges
Coverage
IRanges
updated 12.9 years ago by
Dan Tenenbaum
★ 8.2k • written 12.9 years ago by
Dino Jolic
▴ 10
0
votes
8
replies
2.5k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer
IRanges
BiocGenerics
Cancer
IRanges
BiocGenerics
updated 12.9 years ago by
Michael Lawrence
★ 11k • written 12.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
820
views
[Bioc-devel] knowing what is changed/new in release patches
IRanges
IRanges
13.0 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.7k
views
Rle factors, table and empty levels
IRanges
IRanges
13.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
4
replies
983
views
knowing what is changed/new in release patches
IRanges
IRanges
updated 13.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.0 years ago by
Malcolm Cook
★ 1.6k
0
votes
1
reply
2.3k
views
compilation failed for package \'IRanges\' @str_utils.c(152) identifier \"timezone\" is undefined
Coverage
IRanges
Coverage
IRanges
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Guest User
★ 13k
0
votes
1
reply
701
views
Rle factors, table and empty levels
IRanges
IRanges
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Peter Haverty
▴ 20
0
votes
1
reply
3.0k
views
Integer overflow when summing an 'integer' Rle
Coverage
GO
Cancer
convert
IRanges
Coverage
GO
Cancer
convert
IRanges
updated 13.2 years ago by
delhomme@embl.de
★ 1.2k • written 13.2 years ago by
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.6k
views
GenomicRanges: nearest() for GRanges not returning overlaps
IRanges
GenomicRanges
IRanges
GenomicRanges
13.2 years ago
Valerie Obenchain
★ 6.8k
0
votes
1
reply
1.1k
views
nearest for GRanges ignoring overlapping ranges
Cancer
IRanges
GenomicRanges
Cancer
IRanges
GenomicRanges
updated 13.2 years ago by
Valerie Obenchain
★ 6.8k • written 13.2 years ago by
Janet Young
▴ 740
0
votes
2
replies
1.3k
views
distanceToNearest for GRanges?
IRanges
GenomicRanges
IRanges
GenomicRanges
updated 13.2 years ago by
Valerie Obenchain
★ 6.8k • written 13.2 years ago by
Janet Young
▴ 740
0
votes
8
replies
2.5k
views
good news and bad news
Infrastructure
Cancer
IRanges
GenomicRanges
Infrastructure
Cancer
IRanges
GenomicRanges
updated 13.2 years ago by
Steve Lianoglou
★ 13k • written 13.2 years ago by
Hervé Pagès
16k
0
votes
4
replies
3.1k
views
error in exomeCopy - IRanges?
IRanges
exomeCopy
IRanges
exomeCopy
updated 13.3 years ago by
love
▴ 150 • written 13.3 years ago by
Lescai, Francesco
▴ 380
0
votes
8
replies
2.3k
views
IRanges problem: findOverlaps
IRanges
IRanges
updated 13.3 years ago by
Julien Gagneur
▴ 50 • written 13.3 years ago by
Nicolas DESCOSTES
▴ 20
0
votes
6
replies
2.0k
views
IRanges coverage integer limit?
Coverage
IRanges
Coverage
IRanges
updated 13.3 years ago by
Hervé Pagès
16k • written 13.3 years ago by
delhomme@embl.de
★ 1.2k
0
votes
5
replies
1.9k
views
GenomicRanges: nearest() for GRanges not returning overlaps
IRanges
IRanges
updated 13.3 years ago by
Michael Lawrence
★ 11k • written 13.3 years ago by
james perkins
▴ 300
0
votes
4
replies
1.1k
views
Getting the length of every element from a large CompressedIRangesList is slow
IRanges
IRanges
13.4 years ago
delhomme@embl.de
★ 1.2k
0
votes
11
replies
2.6k
views
nearest() for GRanges
IRanges
IRanges
updated 13.4 years ago by
Martin Morgan
25k • written 13.4 years ago by
Oleg Mayba
▴ 20
0
votes
1
reply
1.7k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP
Coverage
Network
Cancer
TranscriptDb
IRanges
RCytoscape
ggbio
Gviz
SNP
Coverage
updated 13.5 years ago by
Tim Triche
★ 4.2k • written 13.5 years ago by
Ekta Jain
▴ 370
0
votes
1
reply
1.2k
views
seqbias : how to correct weight of mapped short reads?
Coverage
IRanges
seqbias
Coverage
IRanges
seqbias
updated 13.5 years ago by
Martin Morgan
25k • written 13.5 years ago by
Sang Chul Choi
▴ 230
0
votes
10
replies
2.4k
views
How to convert from IRanges(List) to Rle(List)
convert
IRanges
convert
IRanges
updated 13.6 years ago by
Martin Morgan
25k • written 13.6 years ago by
delhomme@embl.de
★ 1.2k
0
votes
0
replies
821
views
IRAnges compile error
IRanges
IRanges
13.6 years ago
Francoise.LECOMTE@biogemma.com
▴ 10
0
votes
0
replies
1.2k
views
Installing GenomicRanges require a version of IRanges unavailable
IRanges
BiocInstaller
IRanges
BiocInstaller
13.7 years ago
Duhaime Johanne
▴ 100
0
votes
0
replies
1.3k
views
using easyRNASeq examples
RNASeq
Annotation
BSgenome
convert
biomaRt
BSgenome
IRanges
DESeq
easyRNASeq
RNASeq
13.7 years ago
delhomme@embl.de
★ 1.2k
0
votes
2
replies
1.1k
views
Integer overflow when summing an 'integer' Rle
Coverage
IRanges
Coverage
IRanges
updated 13.7 years ago by
Hervé Pagès
16k • written 13.7 years ago by
delhomme@embl.de
★ 1.2k
0
votes
1
reply
1.1k
views
htSeqTools - filtered reads > BED?
IRanges
htSeqTools
IRanges
htSeqTools
updated 13.8 years ago by
Michael Lawrence
★ 11k • written 13.8 years ago by
Ian D.
▴ 70
0
votes
0
replies
709
views
Bioconductor Digest, Vol 107, Issue 1
SNP
Annotation
probe
affy
biomaRt
IRanges
SNP
Annotation
probe
affy
biomaRt
IRanges
13.9 years ago
Peter Haverty
▴ 20
0
votes
4
replies
6.0k
views
GRanges - coercion from dataframe
convert
IRanges
convert
IRanges
14.0 years ago
Fahim Md
▴ 250
0
votes
1
reply
1.7k
views
RE : RE : rsamtools installation
Cancer
Biostrings
IRanges
Rsamtools
BiocInstaller
Cancer
Biostrings
IRanges
Rsamtools
updated 14.0 years ago by
Wolfgang RAFFELSBERGER
▴ 140 • written 14.0 years ago by
Martin Morgan
25k
275 results • Page
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