Showing : karyoploter • reset
1
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txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR
9 months ago remi-xavier.coux ▴ 10
1
vote
0
replies
860
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Make custom Txdb class objects from Txdb
GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene
2.4 years ago Shreyash ▴ 10
9
votes
5
replies
2.2k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
1
reply
1.2k
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
4
votes
5
replies
4.0k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by ▴ 160
0
votes
1
reply
1.5k
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
0
votes
1
reply
2.3k
views
How to name the custom genome in karyoploteR ?
software error R bsgenome karyoploter
updated 7.9 years ago by ▴ 150 • written 7.9 years ago by ▴ 20
1
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2
replies
1.7k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by ▴ 10
0
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0
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1.2k
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
8.2 years ago Radek ▴ 90
9 results • Page 1 of 1
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Comment: replace cat with message in glmTreat when lfc = 0 by ATpoint ★ 4.9k
> but there is no way to capture this type of printing when you're fully aware of what is happening and don't want to see the messages (e.g…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
Normalization or filtering are never done for subsets of samples in any limma or edgeR analysis. These things must always be done globally.
Answer: DESeq2 interactions by swbarnes2 ★ 1.4k
The simpler way to do the first four comparisons is to make a new column in colData that is temp_pollution, and specify that column alone a…
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
You are. The reason I pointed you to `forgeBSgenomeDataPkgFromTwobitFile` is because it's much simpler, doesn't require a seed file, and is…
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by mat149 ▴ 80
I've tried the following, but I must be missing something: setwd("C:\\Users\\....\\wd\\dump\\seqs_srcdir") e122<-readDNA…
Votes
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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