Bioconductor Karyoploter

Showing : karyoploter • reset

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599

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

11 months ago remi-xavier.coux ▴ 10

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887

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

2.5 years ago Shreyash ▴ 10

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2.3k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by rtt100 • 0

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1.2k

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KaryoploteR

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by mpigozzi • 0

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4.1k

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karyoploter

updated 6.2 years ago by bernatgel ▴ 150 • written 6.2 years ago by Aditya ▴ 160

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1.5k

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karyoploteR

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by saeed Ur Rehman • 0

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2.4k

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software error R bsgenome karyoploter

updated 8.0 years ago by bernatgel ▴ 150 • written 8.0 years ago by kirannbishwa01 ▴ 20

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1.7k

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karyoploter

updated 8.1 years ago by bgel ▴ 10 • written 8.1 years ago by spr ▴ 10

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1.2k

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KaryoploteR

8.3 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

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Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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