Showing : karyoploter • reset
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txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR
5 months ago remi-xavier.coux ▴ 10
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Make custom Txdb class objects from Txdb
GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene
2.0 years ago Shreyash ▴ 10
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karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
0
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KaryoploteR: error using galGal6 genome
KaryoploteR
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
4
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5
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3.8k
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How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by ▴ 160
0
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Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by • 0
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1
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2.3k
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How to name the custom genome in karyoploteR ?
software error R bsgenome karyoploter
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 20
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2
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1.5k
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KaryoploteR does not work on R.3.3.3
karyoploter
updated 7.6 years ago by ▴ 10 • written 7.6 years ago by ▴ 10
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karyoploteR: custom genome axis $latest.plot
KaryoploteR
7.8 years ago Radek ▴ 90
9 results • Page 1 of 1
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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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