Showing : lmfit • reset
4
votes
8
replies
1.8k
views
Limma for paired and unpaired analysis with adjustment for categorical and continuous variables
limma illumina450k lmfit
updated 7.5 years ago by ★ 7.9k • written 7.5 years ago by • 0
4
votes
6
replies
732
views
mean log2CPM after model fit (lmFit)
limma lmFit mean expression level
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
4
votes
3
replies
4.7k
views
p-values from robust linear model in LIMMA
limma lmFit
updated 9.4 years ago by 50k • written 10.0 years ago by ▴ 40
3
votes
4
replies
1.1k
views
lmFit, number of proteins
lmFit
3.0 years ago • updated 2.9 years ago AyHi • 0
3
votes
6
replies
2.4k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 10
2
votes
8
replies
2.2k
views
lmFit only deals with numerical values (data matrix object)?
limma lmFit
updated 9.4 years ago by 50k • written 13.1 years ago by ▴ 210
2
votes
3
replies
1.7k
views
Differential expression of nomalised and log2 transformed data in limma
limma lmfit model.matrix differential gene expression
6.6 years ago stinehedensted • 0
2
votes
2
replies
2.4k
views
limma: Using log2 fold changes as input for a linear model fit
limma logfc lmfit
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 10
2
votes
5
replies
4.2k
views
Analysis using a linear model
lmfit
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
2
votes
4
replies
1.6k
views
Problem with Agilent microarray data analysis using limma package
limma agilent microarrays lmfit
updated 7.8 years ago by 50k • written 7.8 years ago by • 0
2
votes
5
replies
2.4k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 6.7 years ago by 50k • written 6.7 years ago by ▴ 10
2
votes
2
replies
1.1k
views
Different results from limma depending on whether or not I have an intercept term in my model
limma lmfit voom limma design matrix voomwithqualityweights
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 10
2
votes
2
replies
907
views
design matrix and correlate variable
limma lmfit
updated 5.0 years ago by ★ 28k • written 5.0 years ago by ▴ 10
2
votes
3
replies
1.3k
views
lmFit, continuous exposure, adjustment covariates
lmFit
updated 24 months ago by 50k • written 2.9 years ago by • 0
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
6.2 years ago darthratus • 0
1
vote
8
replies
1.6k
views
Design matrix for regressing gene expression on a continuous variable - age
limma lmfit design matrix r
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
1
vote
5
replies
1.4k
views
Limma for proteomic data! Please Help!
limma voom lmfit ebayesfit
updated 4.1 years ago by 50k • written 4.1 years ago by • 0
1
vote
1
reply
918
views
Limma for paired and unpaired samples. Strange number of DEGs in unpaired samples
limma lmfit R DifferentialExpression
updated 24 months ago by ★ 4.1k • written 24 months ago by • 0
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Get back to individual measures to calculate coefficients like the lmFit fucntion (limma package)
limma lmfit weight individual
7.2 years ago stephane.cauchi ▴ 10
0
votes
0
replies
772
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.0 years ago kyleyxw • 0
21 results • Page 1 of 1
Recent ...
Replies
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly? by ATpoint ★ 4.1k
High counts are generally less prone to noise compared to low counts. Bottom line is that you should stick to specialized testing framework…
Comment: Problem installing ChAMP on a MacBook by ATpoint ★ 4.1k
Did you run these lines? https://www.bioconductor.org/packages/release/bioc/html/ChAMP.html It is good practice to include code and error …
Comment: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 220
Looks like `sgv_pred` does not have the expected format. Was it created or edited manually? I would always recommend creating objects with …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly? by pangtaihin • 0
Thank you:)
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly? by pangtaihin • 0
Thank you! But I apologize for cannot fully grasp your point. Do you mean that when the counts are high, rlogged matrix can represent the t…
Votes
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Awards • All
Popular Question to Guido Hooiveld ★ 4.0k
Scholar to Michael Love 42k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to boczniak767 ▴ 720
Popular Question to jmoon1194 • 0
Locations • All
Germany, just now
Greece, 2 minutes ago
Germany, 6 minutes ago
Slovenia, 24 minutes ago
France, 29 minutes ago
Traffic: 874 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6