Bioconductor LncRNA

Showing : lncRNA • reset

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3.2k

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diffGeneAnalysis lncRNA

4 months ago John ▴ 10

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623

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lncRNA probeID mRNA genesymbol

2.7 years ago Sooni ▴ 10

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2.0k

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recount RNAseq gencode lncRNA gene annotation

updated 6.6 years ago by chris.wilks ▴ 70 • written 6.6 years ago by francesco.gandolfi ▴ 20

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2.0k

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GenomicFeatures TPM FPKM lncRNA

7.4 years ago Ina Hoeschele ▴ 620

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4.1k

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lncRNA featureCounts STAR annotation

updated 7.4 years ago by Wei Shi ★ 3.6k • written 7.4 years ago by inah ▴ 10

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1.9k

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microarray lncrna microrna mrna raw data

updated 7.9 years ago by Axel Klenk ★ 1.1k • written 7.9 years ago by ntagaras • 0

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3.8k

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arraystar lncRNA annotation annotationdbi

updated 10.2 years ago by xiangy7 • 0 • written 10.6 years ago by Kevin Coombes ▴ 430

7 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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