Showing : locatevariants • reset
4
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TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation
2.7 years ago • updated 2.6 years ago davidhillis • 0
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924
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Information about locateVariants function
genomiclocation canonicaltranscripts locateVariants
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
2
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2
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2.0k
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[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation locatevariants metadata mcols
updated 7.9 years ago by ★ 6.8k • written 7.9 years ago by ▴ 680
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predictCoding errors with: sequence ^1$ not found
variantannotation predict coding locateVariants granges
8.0 years ago tony j • 0
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2
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locateVariants function does not find an annotation for the locus
locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation
8.2 years ago Aleksandra • 0
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SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation
updated 8.4 years ago by ★ 6.8k • written 8.4 years ago by • 0
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23
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Distance calculation for variants in intergenic regions
locatevariants variantannotation genomicfeatures
updated 9.0 years ago by ★ 11k • written 9.0 years ago by • 0
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4
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variantAnnotation::locateVariants() with AllVariants(): why do some input variants not get annotated?
variantannotation locatevariants
10.2 years ago Jakob Goldmann • 0
8 results • Page 1 of 1
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Comment: Research and Service Group Leader positions in AI in Biology at EMBL by eja.gssssswssswwse.r.m • 0
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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