Bioconductor Locatevariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

20 months ago davidhillis • 0

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764

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genomiclocation canonicaltranscripts locateVariants

updated 3.2 years ago by James W. MacDonald 67k • written 3.2 years ago by Paola • 0

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1.6k

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variantannotation locatevariants metadata mcols

updated 6.9 years ago by Valerie Obenchain ★ 6.8k • written 6.9 years ago by enricoferrero ▴ 660

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1.3k

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variantannotation predict coding locateVariants granges

7.1 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.3 years ago Aleksandra • 0

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Lna • 0

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2.8k

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locatevariants variantannotation genomicfeatures

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by Lna • 0

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2.4k

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variantannotation locatevariants

9.2 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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