Bioconductor Locatevariants

Showing : locatevariants • reset

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.7 years ago davidhillis • 0

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938

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genomiclocation canonicaltranscripts locateVariants

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by Paola • 0

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variantannotation locatevariants metadata mcols

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by enricoferrero ▴ 680

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variantannotation predict coding locateVariants granges

8.1 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

8.3 years ago Aleksandra • 0

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 8.4 years ago by Valerie Obenchain ★ 6.8k • written 8.4 years ago by Lna • 0

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3.8k

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locatevariants variantannotation genomicfeatures

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by Lna • 0

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2.7k

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variantannotation locatevariants

10.3 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: GOseq Probability Weight Function bad fit by ejasge.r.m • 0

When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130