Bioconductor Locatevariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

19 months ago davidhillis • 0

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753

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genomiclocation canonicaltranscripts locateVariants

updated 3.1 years ago by James W. MacDonald 67k • written 3.1 years ago by Paola • 0

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1.6k

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variantannotation locatevariants metadata mcols

updated 6.9 years ago by Valerie Obenchain ★ 6.8k • written 6.9 years ago by enricoferrero ▴ 660

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1.3k

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variantannotation predict coding locateVariants granges

7.0 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.2 years ago Aleksandra • 0

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Lna • 0

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2.8k

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locatevariants variantannotation genomicfeatures

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by Lna • 0

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2.4k

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variantannotation locatevariants

9.2 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …

Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k

Check the help page for `KEGGFrame`. Your columns are out of order.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you both. Special thanks from Prof. Michael Love. It's rare to find tool authors who respond to users so quickly and supportively. Ma…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Yes, I understand that the p-values are with respect to the full versus reduced model comparison. However, the "genes that cha…

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Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

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Popular Question to Assa Yeroslaviz ★ 1.5k