Bioconductor Log2FC

Showing : log2FC • reset

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5.7k

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limma pvalue log2fc log2

updated 17 months ago by James W. MacDonald 65k • written 8.1 years ago by serpalma.v ▴ 60

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1.3k

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log2FC DESeq2 GSEA voom limma

updated 21 months ago by Gordon Smyth 50k • written 21 months ago by Yang Shi ▴ 10

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1.9k

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deseq2 chipseq counts log2fc error

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by robin.uchiyama • 0

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1.3k

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deseq2 log2fc standard error timecourse

updated 6.2 years ago by ellascottgm • 0 • written 6.2 years ago by Verena • 0

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5.2k

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deseq2 L2FC log2fc

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by sup230 ▴ 30

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5.8k

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deseq2 differential gene expression log2fc

8.1 years ago Osvaldo ▴ 40

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2.4k

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edger log2FC

written 4.5 years ago by matteo.buti • 0

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1.3k

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DESeq2 Log2FC RNASeqData

16 months ago Iwan • 0

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1.8k

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scan Log2FC

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by Vani ▴ 20

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2.3k

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deseq2 R log2fc

updated 8.4 years ago by Michael Love 41k • written 8.4 years ago by Sushant Pawar • 0

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4.2k

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DESeq2 log2FC

19 months ago User000 • 0

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3.8k

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deseq2 log2fc

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by David R ▴ 90

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1.3k

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deseq2 log2fc shrinkage

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by aec ▴ 90

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621

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DESeq2 SingleCell log2FC

12 months ago paria.alipour • 0

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677

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Laia ▴ 10

15 results • Page 1 of 1

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Answer: Store output of matchPWM() by James W. MacDonald 65k

Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …

Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by James W. MacDonald 65k

You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…

Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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