Bioconductor Log2FC

Showing : Log2FC • reset

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1.3k

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fgsea log2FC

6 months ago V_Vibes • 0

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416

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DESeq2 log2FC vst()

updated 6 months ago by ATpoint ★ 4.6k • written 6 months ago by lifeonmars • 0

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876

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DESeq2 SingleCell log2FC

21 months ago • updated 20 months ago paria.alipour • 0

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2.0k

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DESeq2 Log2FC RNASeqData

2.0 years ago Iwan • 0

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941

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DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by Laia ▴ 10

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5.7k

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DESeq2 log2FC

2.3 years ago User000 • 0

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1.7k

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log2FC DESeq2 GSEA voom limma

updated 2.5 years ago by Gordon Smyth 52k • written 2.5 years ago by Yang Shi ▴ 10

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2.9k

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edger log2FC

written 5.2 years ago by matteo.buti • 0

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1.5k

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deseq2 log2fc standard error timecourse

updated 6.9 years ago by ellascottgm • 0 • written 6.9 years ago by Verena • 0

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1.6k

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deseq2 log2fc shrinkage

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by aec ▴ 90

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6.1k

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deseq2 L2FC log2fc

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by sup230 ▴ 30

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4.2k

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deseq2 log2fc

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by David R ▴ 90

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2.3k

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deseq2 chipseq counts log2fc error

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by robin.uchiyama • 0

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6.7k

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limma pvalue log2fc log2

updated 2.1 years ago by James W. MacDonald 67k • written 8.8 years ago by serpalma.v ▴ 60

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6.3k

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deseq2 differential gene expression log2fc

8.8 years ago Osvaldo ▴ 40

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2.5k

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deseq2 R log2fc

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by Sushant Pawar • 0

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2.1k

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scan Log2FC

updated 9.5 years ago by Gordon Smyth 52k • written 9.5 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k

hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.

Answer: Problems with oarfish + tximport + swish by Michael Love 43k

> This is fine Did tximeta() print that a matching transcriptome was found?

Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k

> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …

Comment: Biomart and ensembl not working? by James W. MacDonald 67k

``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…

Votes

Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

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Commentator to Michael Love 43k