Biostar Log2FC

Showing : Log2FC • reset

vote

replies

128

views

DESeq2 Log2FC RNASeqData

29 days ago Iwan • 0

votes

120

views

DESeq2 LRT multifactorial up/down-reg log2FC

updated 7 weeks ago by James W. MacDonald 62k • written 7 weeks ago by Laia ▴ 10

votes

replies

422

views

DESeq2 log2FC

4 months ago User000 • 0

votes

replies

465

views

log2FC DESeq2 GSEA voom limma

updated 6 months ago by Gordon Smyth 47k • written 6 months ago by Yang Shi • 0

vote

replies

1.5k

views

edger log2FC

written 3.3 years ago by matteo.buti • 0

votes

replies

825

views

deseq2 log2fc standard error timecourse

updated 5.0 years ago by ellascottgm • 0 • written 5.0 years ago by Verena • 0

votes

replies

902

views

deseq2 log2fc shrinkage

updated 5.1 years ago by Michael Love 39k • written 5.1 years ago by aec ▴ 90

vote

replies

4.4k

views

deseq2 L2FC log2fc

updated 5.5 years ago by Michael Love 39k • written 5.5 years ago by sup230 ▴ 30

votes

replies

3.0k

views

deseq2 log2fc

updated 6.3 years ago by Michael Love 39k • written 6.3 years ago by David R ▴ 70

votes

replies

1.4k

views

deseq2 chipseq counts log2fc error

updated 6.7 years ago by Michael Love 39k • written 6.7 years ago by robin.uchiyama • 0

votes

replies

4.4k

views

limma pvalue log2fc log2

updated 9 weeks ago by James W. MacDonald 62k • written 6.8 years ago by serpalma.v ▴ 60

vote

replies

5.0k

views

deseq2 differential gene expression log2fc

6.9 years ago Osvaldo ▴ 40

vote

replies

1.9k

views

deseq2 R log2fc

updated 7.2 years ago by Michael Love 39k • written 7.2 years ago by Sushant Pawar • 0

vote

replies

1.3k

views

scan Log2FC

updated 7.5 years ago by Gordon Smyth 47k • written 7.6 years ago by Vani ▴ 20

14 results • Page 1 of 1

Recent ...

Replies

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Comment: Atena package - error (new user) by beatriz.calvo ▴ 30

Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k