Bioconductor Made4

Showing : made4 • reset

votes

replies

2.7k

views

made4 plotarrays correspondence analysis ellipse

updated 10.0 years ago by Aedin Culhane ▴ 510 • written 10.4 years ago by maartenvandijk • 0

votes

replies

1.2k

views

Cancer made4 Cancer made4

13.5 years ago Aedin Culhane ▴ 510

votes

1.5k

views

made4 made4

updated 13.5 years ago by Aedin Culhane ▴ 510 • written 13.5 years ago by Valerie Obenchain ★ 6.8k

votes

replies

1.1k

views

made4 made4

13.5 years ago Barbara Bo-Ju Shih ▴ 40

votes

replies

2.0k

views

Cancer graph made4 Cancer graph made4

15.0 years ago Aedin Culhane ▴ 510

votes

replies

1.5k

views

made4 made4

updated 15.4 years ago by Steve Shen ▴ 330 • written 15.4 years ago by Rohit Farmer ▴ 170

votes

replies

1.1k

views

made4 made4

15.7 years ago xiangxue Guo ▴ 70

votes

replies

1.1k

views

made4 made4

15.7 years ago xiangxue Guo ▴ 70

votes

replies

1.1k

views

Cancer made4 ASSIGN Cancer made4 ASSIGN

15.8 years ago Steve Lianoglou ★ 13k

votes

replies

1.1k

views

Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4

18.0 years ago Aedin Culhane ▴ 510

votes

replies

1.0k

views

made4 made4

18.4 years ago Aedin Culhane ▴ 510

votes

replies

1.6k

views

affy made4 affy made4

updated 18.9 years ago by Martin Morgan 25k • written 18.9 years ago by Jenny Drnevich ★ 2.2k

votes

replies

1.7k

views

Classification affy made4 Classification affy made4

updated 18.9 years ago by Aedin Culhane ▴ 510 • written 19.0 years ago by Heike Pospisil ▴ 310

votes

replies

1.8k

views

made4 made4

updated 19.1 years ago by Seth Falcon ★ 7.4k • written 19.1 years ago by Weiwei Shi ★ 1.2k

votes

replies

1.3k

views

Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4

19.2 years ago Aedin Culhane ▴ 510

votes

replies

1.1k

views

Clustering Cancer CGH made4 Clustering Cancer CGH made4

19.3 years ago Richard Birnie ▴ 10

votes

replies

1.8k

views

Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4

updated 19.5 years ago by Ken Simpson ▴ 70 • written 19.6 years ago by Jenny Drnevich ★ 2.2k

votes

replies

1.2k

views

Biobase affy marray convert made4 Biobase affy marray convert made4

updated 19.9 years ago by Aedin Culhane ▴ 510 • written 19.9 years ago by Jenny Drnevich ★ 2.2k

18 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

Awards • All