Bioconductor Made4

Showing : made4 • reset

votes

replies

2.7k

views

made4 plotarrays correspondence analysis ellipse

updated 9.9 years ago by Aedin Culhane ▴ 510 • written 10.2 years ago by maartenvandijk • 0

votes

replies

1.2k

views

Cancer made4 Cancer made4

13.4 years ago Aedin Culhane ▴ 510

votes

1.4k

views

made4 made4

updated 13.4 years ago by Aedin Culhane ▴ 510 • written 13.4 years ago by Valerie Obenchain ★ 6.8k

votes

replies

1.1k

views

made4 made4

13.4 years ago Barbara Bo-Ju Shih ▴ 40

votes

replies

2.0k

views

Cancer graph made4 Cancer graph made4

14.9 years ago Aedin Culhane ▴ 510

votes

replies

1.5k

views

made4 made4

updated 15.3 years ago by Steve Shen ▴ 330 • written 15.3 years ago by Rohit Farmer ▴ 170

votes

replies

1.1k

views

made4 made4

15.6 years ago xiangxue Guo ▴ 70

votes

replies

1.1k

views

made4 made4

15.6 years ago xiangxue Guo ▴ 70

votes

replies

1.0k

views

Cancer made4 ASSIGN Cancer made4 ASSIGN

15.7 years ago Steve Lianoglou ★ 13k

votes

replies

1.1k

views

Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4

17.9 years ago Aedin Culhane ▴ 510

votes

replies

1.0k

views

made4 made4

18.3 years ago Aedin Culhane ▴ 510

votes

replies

1.6k

views

affy made4 affy made4

updated 18.8 years ago by Martin Morgan 25k • written 18.8 years ago by Jenny Drnevich ★ 2.2k

votes

replies

1.7k

views

Classification affy made4 Classification affy made4

updated 18.8 years ago by Aedin Culhane ▴ 510 • written 18.8 years ago by Heike Pospisil ▴ 310

votes

replies

1.7k

views

made4 made4

updated 19.0 years ago by Seth Falcon ★ 7.4k • written 19.0 years ago by Weiwei Shi ★ 1.2k

votes

replies

1.3k

views

Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4

19.1 years ago Aedin Culhane ▴ 510

votes

replies

1.1k

views

Clustering Cancer CGH made4 Clustering Cancer CGH made4

19.2 years ago Richard Birnie ▴ 10

votes

replies

1.8k

views

Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4

updated 19.4 years ago by Ken Simpson ▴ 70 • written 19.4 years ago by Jenny Drnevich ★ 2.2k

votes

replies

1.2k

views

Biobase affy marray convert made4 Biobase affy marray convert made4

updated 19.8 years ago by Aedin Culhane ▴ 510 • written 19.8 years ago by Jenny Drnevich ★ 2.2k

18 results • Page 1 of 1

Recent ...

Replies

Comment: GO.db and others package Download failure by Skyler • 0

Hi James, Below I have inserted all of my code. I have run r as an administrator and not as an administrator. I have changed my CRANmirror …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Exactly, MDS was computed on logCPM values from `cpm(x, log=TRUE)` after running `calcNormFactors(method="TMMwsp")` on the DGE object. I al…

Answer: GO.db and others package Download failure by James W. MacDonald 68k

You didn't get an error. You didn't even get a warning! You simply got a message saying that two (unrelated) packages were not updated. As …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

MDS of what quantity? LogCPM from `cpm()`? I don't have a definitive answer, but my feeling that is that library size effects are to be ex…

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…