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maftools
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4
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6
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2.7k
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about MAFTOOLS and MAF files
maftools
genevisr
7.3 years ago
Bogdan
▴ 670
2
votes
3
replies
2.2k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap
maftools
updated 6.7 years ago by
anand_mt
▴ 90 • written 6.7 years ago by
Bogdan
▴ 670
1
vote
3
replies
3.1k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 7 weeks ago by
snijesh
▴ 20 • written 6.6 years ago by
Ramiro Magno
▴ 100
2
votes
2
replies
1.9k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
7.3 years ago
Bogdan
▴ 670
2
votes
2
replies
1.4k
views
about reshaping a data frame
maftools
complexheatmap
updated 6.9 years ago by
Haiying.Kong
▴ 110 • written 6.9 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.1k
views
Oncoplot with own MutSig file
maftools
mutsig
5.2 years ago
rina
▴ 30
0
votes
1
reply
1.5k
views
Maftools required fields do not match with vignette
maftools
updated 6.8 years ago by
anand_mt
▴ 90 • written 6.8 years ago by
Silvia
• 0
0
votes
1
reply
1.4k
views
how to create cnTable in maftools ?
maftools
updated 7.1 years ago by
anand_mt
▴ 90 • written 7.1 years ago by
seeker
• 0
0
votes
1
reply
2.0k
views
How to plot Oncoplot with out sorting
maftools
updated 6.6 years ago by
anand_mt
▴ 90 • written 6.6 years ago by
seeker
• 0
0
votes
1
reply
1.5k
views
about maftools and gene names
maftools
updated 7.2 years ago by
anand_mt
▴ 90 • written 7.2 years ago by
Bogdan
▴ 670
1
vote
1
reply
1.1k
views
FilterMaf by ranges
maftools
updated 19 months ago by
Nogayhan
• 0 • written 2.3 years ago by
Jeni
▴ 10
0
votes
0
replies
574
views
conversion a VCF file into a MAF file
VCFArray
maftools
9 months ago
Bogdan
▴ 670
0
votes
0
replies
673
views
Oncoplot user error or bug?
maftools
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
oddmund.nordgard
• 0
0
votes
0
replies
1.6k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
23 months ago
e
• 0
0
votes
0
replies
430
views
Altered Sample in mafSummary
mafSummary
maftools
3.0 years ago
ymoonleong
• 0
0
votes
0
replies
1.2k
views
function GDCquery_Maf error
rstudio
maftools
2.1 years ago
misslubblys
• 0
0
votes
0
replies
1.1k
views
Errors in maftoos::readGistic
maftools
Gistic
7.5 years ago
hustlxc
• 0
17 results • Page
1 of 1
Recent ...
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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