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maftools
•
reset
4
votes
6
replies
2.7k
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about MAFTOOLS and MAF files
maftools
genevisr
7.2 years ago
Bogdan
▴ 670
2
votes
2
replies
1.9k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
7.3 years ago
Bogdan
▴ 670
2
votes
3
replies
2.2k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap
maftools
updated 6.7 years ago by
anand_mt
▴ 90 • written 6.7 years ago by
Bogdan
▴ 670
2
votes
2
replies
1.4k
views
about reshaping a data frame
maftools
complexheatmap
updated 6.8 years ago by
Haiying.Kong
▴ 110 • written 6.8 years ago by
Bogdan
▴ 670
1
vote
3
replies
3.1k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 6 weeks ago by
snijesh
▴ 20 • written 6.6 years ago by
Ramiro Magno
▴ 100
1
vote
1
reply
1.1k
views
FilterMaf by ranges
maftools
updated 18 months ago by
Nogayhan
• 0 • written 2.3 years ago by
Jeni
▴ 10
0
votes
0
replies
667
views
Oncoplot user error or bug?
maftools
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
oddmund.nordgard
• 0
0
votes
0
replies
1.6k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
23 months ago
e
• 0
0
votes
0
replies
426
views
Altered Sample in mafSummary
mafSummary
maftools
3.0 years ago
ymoonleong
• 0
0
votes
0
replies
1.2k
views
function GDCquery_Maf error
rstudio
maftools
2.1 years ago
misslubblys
• 0
0
votes
0
replies
1.1k
views
Errors in maftoos::readGistic
maftools
Gistic
7.5 years ago
hustlxc
• 0
0
votes
0
replies
559
views
conversion a VCF file into a MAF file
VCFArray
maftools
8 months ago
Bogdan
▴ 670
0
votes
1
reply
1.5k
views
about maftools and gene names
maftools
updated 7.2 years ago by
anand_mt
▴ 90 • written 7.2 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.4k
views
how to create cnTable in maftools ?
maftools
updated 7.1 years ago by
anand_mt
▴ 90 • written 7.1 years ago by
seeker
• 0
0
votes
1
reply
1.5k
views
Maftools required fields do not match with vignette
maftools
updated 6.8 years ago by
anand_mt
▴ 90 • written 6.8 years ago by
Silvia
• 0
0
votes
1
reply
2.0k
views
How to plot Oncoplot with out sorting
maftools
updated 6.6 years ago by
anand_mt
▴ 90 • written 6.6 years ago by
seeker
• 0
0
votes
1
reply
1.1k
views
Oncoplot with own MutSig file
maftools
mutsig
5.2 years ago
rina
▴ 30
17 results • Page
1 of 1
Recent ...
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Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
James W. MacDonald
65k
You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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