Showing : makecdfenv • reset
0
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3
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1.7k
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unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
2
votes
8
replies
4.1k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.7 years ago jayme.rickman • 0
2
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4
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1.5k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.0 years ago by 65k • written 9.0 years ago by ▴ 10
0
votes
4
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1.6k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by 65k
0
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1
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1.6k
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Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.1 years ago by 65k • written 10.1 years ago by ★ 13k
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0
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1.8k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
10.3 years ago Isaac Neuhaus ▴ 360
0
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0
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1.5k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
10.3 years ago James W. MacDonald 65k
1
vote
4
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2.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 10.3 years ago by 65k • written 10.3 years ago by ★ 13k
0
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3
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1.3k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 11.2 years ago by ★ 6.5k • written 11.2 years ago by ★ 13k
0
votes
2
replies
1.1k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 11.3 years ago by 65k • written 11.3 years ago by ▴ 50
0
votes
2
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1.2k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 12.3 years ago by 65k • written 12.3 years ago by ▴ 630
0
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0
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1.3k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
12.3 years ago Olivier Lucas ▴ 40
0
votes
0
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924
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
12.6 years ago boczniak767 ▴ 720
0
votes
0
replies
1.1k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
14.4 years ago James W. MacDonald 65k
0
votes
1
reply
1.0k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ▴ 940
0
votes
2
replies
1.3k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 14.8 years ago by 65k • written 14.8 years ago by ▴ 40
0
votes
2
replies
1.3k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.1 years ago by ★ 1.2k • written 15.1 years ago by ▴ 20
0
votes
2
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1.1k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ▴ 20
0
votes
2
replies
1.0k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 15.4 years ago by 65k • written 15.4 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
0
votes
1
reply
821
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 40
0
votes
5
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1.1k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.0 years ago by 21k • written 16.0 years ago by ★ 2.0k
0
votes
1
reply
987
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ★ 2.4k
0
votes
1
reply
873
views
error in makecdfenv
makecdfenv makecdfenv
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 130
0
votes
2
replies
1.1k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 16.8 years ago by ▴ 50 • written 16.8 years ago by ▴ 290
0
votes
9
replies
1.7k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 90
0
votes
6
replies
1.2k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 65k • written 16.9 years ago by ★ 1.3k
0
votes
3
replies
1.7k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
16.9 years ago Salim Charaniya ▴ 20
0
votes
4
replies
1.7k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.0 years ago by ★ 1.2k • written 17.0 years ago by ▴ 30
0
votes
1
reply
1.1k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 60
0
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0
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871
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
17.4 years ago Charlyn Suarez ▴ 10
0
votes
4
replies
1.2k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 17.4 years ago by 25k • written 17.4 years ago by ★ 13k
0
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1
reply
1.2k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 17.5 years ago by 65k • written 17.5 years ago by ★ 2.2k
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
1
reply
1.1k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 20
0
votes
2
replies
2.5k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 17.7 years ago by ▴ 120 • written 17.7 years ago by ▴ 340
0
votes
5
replies
1.5k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
17.7 years ago Wu, Xiwei ▴ 350
0
votes
0
replies
718
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
18.0 years ago Justin Borevitz ▴ 170
0
votes
1
reply
852
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.0 years ago by 65k • written 18.0 years ago by ▴ 30
0
votes
1
reply
1000
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 18.5 years ago by ▴ 950 • written 18.5 years ago by ▴ 190
0
votes
0
replies
962
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
18.7 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
665
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 30
0
votes
1
reply
1.0k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 18.9 years ago by 65k • written 18.9 years ago by ▴ 80
0
votes
3
replies
1.3k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.0 years ago by 65k • written 19.0 years ago by ▴ 40
0
votes
0
replies
838
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
19.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
824
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.0 years ago James W. MacDonald 65k
0
votes
1
reply
835
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 140
0
votes
2
replies
1.0k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 110
0
votes
1
reply
1.1k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 10
0
votes
2
replies
994
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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