Showing : makecdfenv • reset
0
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3
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1.5k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 6.4 years ago by 64k • written 6.4 years ago by • 0
2
votes
8
replies
3.8k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.2 years ago jayme.rickman • 0
2
votes
4
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1.4k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 8.6 years ago by 64k • written 8.6 years ago by ▴ 10
0
votes
4
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1.5k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 9.4 years ago by ★ 3.9k • written 9.4 years ago by 64k
0
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1
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1.5k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 9.7 years ago by 64k • written 9.7 years ago by ★ 12k
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0
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1.7k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
9.9 years ago Isaac Neuhaus ▴ 360
0
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0
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1.4k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
9.9 years ago James W. MacDonald 64k
1
vote
4
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2.8k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 9.9 years ago by 64k • written 9.9 years ago by ★ 12k
0
votes
3
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1.2k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 10.8 years ago by 6.5k • written 10.8 years ago by ★ 12k
0
votes
2
replies
1.1k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 10.9 years ago by 64k • written 10.9 years ago by ▴ 50
0
votes
2
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1.1k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 11.9 years ago by 64k • written 11.9 years ago by ▴ 630
0
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0
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1.2k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
11.9 years ago Olivier Lucas ▴ 40
0
votes
0
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832
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
12.2 years ago boczniak767 ▴ 720
0
votes
0
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1.0k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
13.9 years ago James W. MacDonald 64k
0
votes
1
reply
931
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 14.3 years ago by ★ 4.3k • written 14.3 years ago by ▴ 940
0
votes
2
replies
1.2k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 14.4 years ago by 64k • written 14.4 years ago by ▴ 40
0
votes
2
replies
1.2k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 14.7 years ago by ★ 1.2k • written 14.7 years ago by ▴ 20
0
votes
2
replies
1.0k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 14.9 years ago by 6.5k • written 14.9 years ago by ▴ 20
0
votes
2
replies
921
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 15.0 years ago by 64k • written 15.0 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.0 years ago by ▴ 140 • written 15.0 years ago by 64k
0
votes
1
reply
748
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 15.3 years ago by 64k • written 15.3 years ago by ▴ 40
0
votes
5
replies
1.0k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 2.0k
0
votes
1
reply
891
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 16.2 years ago by ★ 1.2k • written 16.2 years ago by ★ 2.4k
0
votes
1
reply
788
views
error in makecdfenv
makecdfenv makecdfenv
updated 16.2 years ago by 64k • written 16.2 years ago by ▴ 130
0
votes
2
replies
1.0k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 16.4 years ago by ▴ 50 • written 16.4 years ago by ▴ 290
0
votes
9
replies
1.4k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 16.4 years ago by 64k • written 16.4 years ago by ▴ 90
0
votes
6
replies
1.0k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 16.5 years ago by 64k • written 16.5 years ago by ★ 1.3k
0
votes
3
replies
1.6k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
16.5 years ago Salim Charaniya ▴ 20
0
votes
4
replies
1.6k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ▴ 30
0
votes
1
reply
979
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 60
0
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0
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787
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
16.9 years ago Charlyn Suarez ▴ 10
0
votes
4
replies
1.1k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 17.0 years ago by 25k • written 17.0 years ago by 13k
0
votes
1
reply
1.1k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 17.1 years ago by 64k • written 17.1 years ago by ★ 2.2k
0
votes
5
replies
1.4k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.1 years ago by ▴ 20 • written 17.1 years ago by ★ 2.2k
0
votes
5
replies
1.4k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
17.3 years ago Wu, Xiwei ▴ 350
0
votes
1
reply
986
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 17.3 years ago by 64k • written 17.3 years ago by ▴ 20
0
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2
replies
2.3k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 17.3 years ago by ▴ 120 • written 17.3 years ago by ▴ 340
0
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0
replies
641
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
17.6 years ago Justin Borevitz ▴ 170
0
votes
1
reply
769
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 17.6 years ago by 64k • written 17.6 years ago by ▴ 30
0
votes
1
reply
901
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 18.1 years ago by ▴ 950 • written 18.1 years ago by ▴ 190
0
votes
0
replies
884
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
18.3 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
600
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 30
0
votes
1
reply
956
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 18.5 years ago by 64k • written 18.5 years ago by ▴ 80
0
votes
3
replies
1.2k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 18.6 years ago by 64k • written 18.6 years ago by ▴ 40
0
votes
0
replies
759
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
18.6 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
740
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
18.6 years ago James W. MacDonald 64k
0
votes
1
reply
772
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 140
0
votes
2
replies
946
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 18.6 years ago by ★ 5.5k • written 18.6 years ago by ▴ 110
0
votes
1
reply
1.0k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 18.6 years ago by 64k • written 18.7 years ago by ▴ 10
0
votes
2
replies
915
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 18.7 years ago by 64k • written 18.7 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: WGCNA documentation not available by James W. MacDonald 64k
Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…
Comment: ATACseqQC shiftGAlignmentsList() problem by Ou, Jianhong ★ 1.3k
try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.
Comment: ATACseqQC shiftGAlignmentsList() problem by jfmay • 0
Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…
Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k
That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…
Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0
I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…
Votes
Answer: ScRNAseq analysis scran :: quickcluster Error
Comment: Ensembl down???
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
Comment: Ensembl down???
Answer: SingleR annotation of several slots/patients
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