Showing : makecdfenv • reset
2
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8
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4.9k
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Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.5 years ago jayme.rickman • 0
1
vote
4
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3.3k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
votes
2
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2.8k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.6 years ago by ▴ 120 • written 18.6 years ago by ▴ 340
0
votes
9
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2.2k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 90
0
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4
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2.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 30
0
votes
0
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2.0k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
11.2 years ago Isaac Neuhaus ▴ 360
0
votes
5
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2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ★ 2.2k
0
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3
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2.0k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.7 years ago by 68k • written 7.7 years ago by • 0
0
votes
3
replies
1.9k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.8 years ago Salim Charaniya ▴ 20
0
votes
1
reply
1.9k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.0 years ago by 68k • written 11.0 years ago by ★ 13k
0
votes
4
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1.9k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by 68k
0
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2
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1.8k
views
RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
updated 21.2 years ago by ▴ 140 • written 21.2 years ago by ▴ 70
0
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5
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1.8k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.6 years ago Wu, Xiwei ▴ 350
2
votes
4
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1.8k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 10
0
votes
0
replies
1.7k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
11.2 years ago James W. MacDonald 68k
0
votes
3
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1.6k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.1 years ago by ★ 6.5k • written 12.1 years ago by ★ 13k
0
votes
3
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1.5k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 40
0
votes
2
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1.5k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.0 years ago by ★ 1.2k • written 16.0 years ago by ▴ 20
0
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1
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1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.3 years ago by ▴ 140 • written 16.3 years ago by 68k
0
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0
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1.4k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
13.2 years ago Olivier Lucas ▴ 40
0
votes
2
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1.4k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 40
0
votes
4
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1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.3 years ago by 25k • written 18.3 years ago by ★ 13k
0
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3
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1.4k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
20.6 years ago Mayte Suarez-Farinas ▴ 300
0
votes
6
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1.4k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 17.8 years ago by 68k • written 17.8 years ago by ★ 1.3k
0
votes
5
replies
1.4k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 21k • written 16.9 years ago by ★ 2.0k
0
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1
reply
1.4k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 18.4 years ago by 68k • written 18.4 years ago by ★ 2.2k
0
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2
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1.4k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 630
0
votes
1
reply
1.4k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 22.1 years ago by ▴ 640 • written 22.1 years ago by ▴ 20
0
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2
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1.3k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 50
0
votes
2
replies
1.3k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.2 years ago by ★ 6.5k • written 16.2 years ago by ▴ 20
0
votes
0
replies
1.3k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
15.2 years ago James W. MacDonald 68k
0
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2
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1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.7 years ago by ▴ 50 • written 17.7 years ago by ▴ 290
0
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1
reply
1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 60
0
votes
1
reply
1.3k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 20.7 years ago by ★ 1.1k • written 20.7 years ago by ▴ 10
0
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1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 10
0
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1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 20
0
votes
2
replies
1.2k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 60
0
votes
2
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1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.9 years ago by ★ 5.5k • written 19.9 years ago by ▴ 110
0
votes
1
reply
1.2k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 950
0
votes
1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.4 years ago by ▴ 950 • written 19.4 years ago by ▴ 190
0
votes
2
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1.2k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
0
votes
0
replies
1.2k
views
make CDF env (fwd)
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
22.0 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.2k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.5 years ago by ★ 1.2k • written 17.5 years ago by ★ 2.4k
0
votes
0
replies
1.2k
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
19.6 years ago Ruppert Valentino ▴ 270
0
votes
2
replies
1.1k
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
20.1 years ago Margaret Gardiner-Garden ▴ 160
0
votes
0
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1.1k
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
13.5 years ago boczniak767 ▴ 740
0
votes
1
reply
1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 130
0
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0
replies
1.0k
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.9 years ago James W. MacDonald 68k
0
votes
0
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1.0k
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.2 years ago Charlyn Suarez ▴ 10
50 results • Page 1 of 1
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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