Showing : makecdfenv • reset
2
votes
4
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1.8k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 10
2
votes
8
replies
4.9k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.5 years ago jayme.rickman • 0
2
votes
1
reply
300
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 3 months ago by 68k • written 3 months ago by • 0
1
vote
4
replies
3.3k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
votes
1
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1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.3 years ago by ▴ 950 • written 19.3 years ago by ▴ 190
0
votes
5
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2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.4 years ago by ▴ 20 • written 18.4 years ago by ★ 2.2k
0
votes
2
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1.5k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.0 years ago by ★ 1.2k • written 16.0 years ago by ▴ 20
0
votes
2
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1.4k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 630
0
votes
0
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799
views
cdf environments for 100k mapping arrays
makecdfenv makecdfenv
20.3 years ago Christopher, Neil NIH/NCI ▴ 70
0
votes
0
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856
views
Re: makecdfenv
makecdfenv makecdfenv
22.1 years ago Rafael A. Irizarry ▴ 640
0
votes
1
reply
1.3k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 22.0 years ago by ▴ 640 • written 22.0 years ago by ▴ 20
0
votes
0
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1.2k
views
make CDF env (fwd)
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
22.0 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
835
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by ▴ 20
0
votes
1
reply
839
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 10
0
votes
0
replies
913
views
How to create customized probe package for GCRMA?
cdf probe affy makecdfenv gcrma cdf probe affy makecdfenv gcrma
20.9 years ago Kun Zhang ▴ 10
0
votes
1
reply
1.3k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 20.7 years ago by ★ 1.1k • written 20.7 years ago by ▴ 10
0
votes
1
reply
824
views
makecdfenv
makecdfenv makecdfenv
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 80
0
votes
1
reply
953
views
Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 20.6 years ago by ▴ 950 • written 20.6 years ago by ▴ 60
0
votes
1
reply
903
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.4 years ago by 68k • written 20.4 years ago by ▴ 510
0
votes
0
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938
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
20.4 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
944
views
Custom CDF files
ChipName cdf probe makecdfenv gcrma ChipName cdf probe makecdfenv gcrma
20.1 years ago Ken Simpson ▴ 70
0
votes
2
replies
1.1k
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
20.1 years ago Margaret Gardiner-Garden ▴ 160
0
votes
2
replies
1.2k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 10
0
votes
1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.9 years ago by ★ 5.5k • written 19.9 years ago by ▴ 110
0
votes
1
reply
977
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 140
0
votes
0
replies
1.0k
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.8 years ago James W. MacDonald 68k
0
votes
0
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987
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
19.8 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 80
0
votes
1
reply
802
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 30
0
votes
0
replies
1.1k
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
19.6 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
991
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 30
0
votes
0
replies
905
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
18.9 years ago Justin Borevitz ▴ 170
0
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5
replies
1.8k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.6 years ago Wu, Xiwei ▴ 350
0
votes
2
replies
2.8k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.6 years ago by ▴ 120 • written 18.6 years ago by ▴ 340
0
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1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 20
0
votes
1
reply
1.4k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 18.4 years ago by 68k • written 18.4 years ago by ★ 2.2k
0
votes
4
replies
1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.3 years ago by 25k • written 18.3 years ago by ★ 13k
0
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0
replies
1.0k
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.2 years ago Charlyn Suarez ▴ 10
0
votes
1
reply
1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 60
0
votes
4
replies
2.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 30
0
votes
3
replies
1.9k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.8 years ago Salim Charaniya ▴ 20
0
votes
0
replies
931
views
Questions on getting information from affy's CEL, CDF or 1lq file s
cdf probe makecdfenv cdf probe makecdfenv
22.0 years ago Wang, Hui ▴ 170
0
votes
9
replies
2.1k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 90
0
votes
2
replies
1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.7 years ago by ▴ 50 • written 17.7 years ago by ▴ 290
0
votes
1
reply
1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 130
0
votes
1
reply
1.2k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.5 years ago by ★ 1.2k • written 17.5 years ago by ★ 2.4k
0
votes
5
replies
1.4k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.9 years ago by 21k • written 16.9 years ago by ★ 2.0k
0
votes
1
reply
987
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 40
0
votes
1
reply
1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.3 years ago by ▴ 140 • written 16.3 years ago by 68k
50 results • Page 1 of 1
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Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question? by DavideSant • 0
Thank you, this was super useful!
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Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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