Bioconductor Maplot

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1.5k

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DESeq2 MAplot

updated 2.0 years ago by ATpoint ★ 4.7k • written 2.0 years ago by Michael • 0

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2.9k

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MAplot

2.1 years ago Nathalie ▴ 20

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3.3k

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DESeq2 MAplot deseq

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by sp • 0

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988

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deseq2 MAplot lfcshrink

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by evelas13 • 0

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765

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deseq2 maplot annotation

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by rbronste ▴ 60

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3.2k

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diffbind R MAplot Chipseq

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.2 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by phurbusang • 0

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2.4k

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deseq2 maplot subset

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by rbronste ▴ 60

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2.0k

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diffbind maplot

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by grundelphine • 0

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1.5k

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diffbind deseq2 maplot

updated 7.4 years ago by Rory Stark ★ 5.2k • written 7.4 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by jshouse ▴ 10

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2.2k

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edgeR MAplot rnaseq differential gene expression

updated 8.5 years ago by Gordon Smyth 52k • written 8.5 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.9 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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