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maplot
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0
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2
replies
1.5k
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 22 months ago by
ATpoint
★ 4.6k • written 22 months ago by
Michael
• 0
10
votes
8
replies
2.8k
views
MA plot
MAplot
23 months ago
Nathalie
▴ 20
0
votes
3
replies
3.1k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
sp
• 0
1
vote
1
reply
959
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
evelas13
• 0
1
vote
2
replies
742
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 5.1 years ago by
Michael Love
43k • written 5.1 years ago by
rbronste
▴ 60
2
votes
2
replies
3.1k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.6 years ago by
Rory Stark
★ 5.2k • written 5.6 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.6k
views
MA plot scattering pattern
deseq2
MAplot
6.1 years ago
avitalwasser
• 0
5
votes
8
replies
1.5k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 6.1 years ago by
James W. MacDonald
67k • written 6.1 years ago by
rbronste
▴ 60
0
votes
4
replies
1.3k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
ma619
• 0
0
votes
1
reply
1.7k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
phurbusang
• 0
2
votes
1
reply
2.4k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
rbronste
▴ 60
2
votes
4
replies
1.9k
views
DiffBind MA plot
diffbind
maplot
updated 6.9 years ago by
Rory Stark
★ 5.2k • written 6.9 years ago by
grundelphine
• 0
1
vote
2
replies
1.4k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 7.2 years ago by
Rory Stark
★ 5.2k • written 7.2 years ago by
rbronste
▴ 60
0
votes
3
replies
2.9k
views
DESeq2 MA plot look different
deseq2
maplot
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
jshouse
▴ 10
3
votes
6
replies
2.1k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 8.4 years ago by
Gordon Smyth
52k • written 8.4 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.4k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.7 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown
by
neighsanlo
• 0
@[sandtrix][1] This is useful information. [1]: https://sandtrix.io
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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