Bioconductor Maplot

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1.9k

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DESeq2 MAplot

updated 2.8 years ago by ATpoint ★ 5.0k • written 2.8 years ago by Michael • 0

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3.6k

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MAplot

2.8 years ago Nathalie ▴ 20

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3.9k

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DESeq2 MAplot deseq

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by sp • 0

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1.1k

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deseq2 MAplot lfcshrink

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by evelas13 • 0

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931

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deseq2 maplot annotation

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by rbronste ▴ 60

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3.7k

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diffbind R MAplot Chipseq

updated 6.5 years ago by Rory Stark ★ 5.2k • written 6.5 years ago by melnuesch ▴ 10

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1.9k

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deseq2 MAplot

7.0 years ago avitalwasser • 0

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1.7k

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deseq2 maplot

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by rbronste ▴ 60

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1.5k

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deseq2 normalization maplot rnaseq

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by ma619 • 0

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1.9k

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MAPLOT DESEQ2 RNASEQ

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by phurbusang • 0

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2.7k

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deseq2 maplot subset

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by rbronste ▴ 60

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2.3k

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diffbind maplot

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by grundelphine • 0

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1.7k

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diffbind deseq2 maplot

updated 8.2 years ago by Rory Stark ★ 5.2k • written 8.2 years ago by rbronste ▴ 60

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3.2k

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deseq2 maplot

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by jshouse ▴ 10

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2.6k

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edgeR MAplot rnaseq differential gene expression

updated 9.3 years ago by Gordon Smyth 53k • written 9.3 years ago by joseph.bergenstrahle • 0

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1.5k

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MAplot rnaseq cummerbund

9.6 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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