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Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
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Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
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XW
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Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
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The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
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Again, this is where you need to read the help page and try to diagnose. It says
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index: an index vector or a list of index vectors. …
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Chris
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Thanks James! That is a great tip.
cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design)
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