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meme
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0
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1.1k
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
6.9 years ago
rbronste
▴ 60
1
vote
2
replies
1.6k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
rbronste
▴ 60
0
votes
0
replies
1.0k
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
7.6 years ago
aramp10
• 0
1
vote
2
replies
1.5k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 7.6 years ago by
Ou, Jianhong
★ 1.3k • written 7.6 years ago by
lmolla
▴ 10
0
votes
0
replies
1.6k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
9.6 years ago
enricoferrero
▴ 680
0
votes
0
replies
1.6k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
9.8 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
4.9k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 9.9 years ago by
Hervé Pagès
16k • written 9.9 years ago by
vinod.acear
▴ 50
7 results • Page
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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abaed
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ubjw24
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Hervé Pagès
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