Bioconductor Meme

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1.2k

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pwm motifs jaspar meme motif analysis

7.1 years ago rbronste ▴ 60

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1.7k

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meme ame motif dataframe granges

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by rbronste ▴ 60

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1.1k

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motifstack meme

7.9 years ago aramp10 • 0

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motifstack meme

updated 7.9 years ago by Ou, Jianhong ★ 1.3k • written 7.9 years ago by lmolla ▴ 10

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motfdb pwmenrich meme

9.9 years ago enricoferrero ▴ 680

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1.7k

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illumina 450k motifs meme

10.0 years ago Gustavo Fernández Bayón ▴ 440

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5.0k

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motif motifdb meme

updated 10.2 years ago by Hervé Pagès 16k • written 10.2 years ago by vinod.acear ▴ 50

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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