Bioconductor Meme

Showing : meme • reset

votes

replies

1.2k

views

pwm motifs jaspar meme motif analysis

7.0 years ago rbronste ▴ 60

vote

replies

1.7k

views

meme ame motif dataframe granges

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by rbronste ▴ 60

votes

replies

1.0k

views

motifstack meme

7.7 years ago aramp10 • 0

vote

replies

1.6k

views

motifstack meme

updated 7.7 years ago by Ou, Jianhong ★ 1.3k • written 7.7 years ago by lmolla ▴ 10

votes

replies

1.6k

views

motfdb pwmenrich meme

9.7 years ago enricoferrero ▴ 680

votes

replies

1.7k

views

illumina 450k motifs meme

9.9 years ago Gustavo Fernández Bayón ▴ 440

votes

4.9k

views

motif motifdb meme

updated 10.0 years ago by Hervé Pagès 16k • written 10.1 years ago by vinod.acear ▴ 50

7 results • Page 1 of 1

Recent ...

Replies

Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to jared.andrews07 ▴ 30

Popular Question to James W. MacDonald 68k