Bioconductor Meme

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921

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pwm motifs jaspar meme motif analysis

6.0 years ago rbronste ▴ 60

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meme ame motif dataframe granges

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by rbronste ▴ 60

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812

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motifstack meme

6.7 years ago aramp10 • 0

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1.3k

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motifstack meme

updated 6.7 years ago by Ou, Jianhong ★ 1.3k • written 6.7 years ago by lmolla ▴ 10

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1.4k

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motfdb pwmenrich meme

8.7 years ago enricoferrero ▴ 660

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1.5k

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illumina 450k motifs meme

8.8 years ago Gustavo Fernández Bayón ▴ 440

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4.3k

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motif motifdb meme

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by vinod.acear ▴ 50

7 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

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Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

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Scholar to Haibo Liu ▴ 20