Biostar Memory problem

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deseq2 memory problem

updated 3.7 years ago by Michael Love 37k • written 3.7 years ago by rbronste ▴ 60

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1.2k

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oligo hta2.0 affymetrix microarrays memory problem

updated 5.2 years ago by James W. MacDonald 60k • written 5.2 years ago by svlachavas ▴ 800

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memory problem gaia

updated 4.6 years ago by Sandro Morganella ▴ 40 • written 4.6 years ago by drusmanbashir • 0

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454

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big data methylmix memory problem

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by perdedorium • 0

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452

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edgeR processamplicons memory problem

3.9 years ago sdalin • 0

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259

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memory problem champ.load

3.6 years ago petra.lenzini • 0

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Comment: Error: DESeq(dds , useT = TRUE, minmu = 1e-06, test = "LRT", : likelih by ATpoint ★ 1.3k

Would you mind reading the vignette towards how the LRT works: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2…

Comment: cellCounts() function floating point error by Yang Liao ▴ 340

Thanks for the report but the error cannot be reproduced. We tested `Rsubread` 2.10.3 in `R` 4.2.0 and `Bioconductor` 3.15, and `cellCounts…

Comment: rtracklayer export GRangesList as gtf and change attributes by James • 0

I have found a way to export a GTF so that the 3rd column no longer lists **sequence_feature** but instead lists the feature, such as **exo…

Comment: Using Age or other numerical variable to model expression in deseq2 by swbarnes2 ★ 1.1k

You can import age and not make it a factor.

Comment: Using Age or other numerical variable to model expression in deseq2 by krushnach80 • 0

"Why is that" no as an example i was citing that.."certainly don't want to make the interaction between the nuisance variable and your vari…

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C: DESeq2 lfcShrink() usage of coef vs. usage of contrast

Comment: Using Age or other numerical variable to model expression in deseq2

Answer: Using Age or other numerical variable to model expression in deseq2

Awards • All

Scholar to James W. MacDonald 60k

Teacher to Michael Love 37k