Bioconductor Methylation

Showing : methylation • reset

votes

views

MethylationArray methylationArrayAnalysis MethylationArrayData meffil methylation

updated 8 hours ago by James W. MacDonald 65k • written 13 hours ago by kyj2226 • 0

vote

replies

310

views

EPICV1 Methylation combineArrays minifi EPICv2manifest

4 weeks ago • updated 4 days ago Kim • 0

votes

162

views

bsseq methylation

updated 5 weeks ago by James W. MacDonald 65k • written 5 weeks ago by ja569116 • 0

vote

replies

551

views

edgeR methylation

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by sat • 0

votes

replies

262

views

Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

4 months ago kyj2226 • 0

vote

replies

1.4k

views

DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

votes

replies

2.0k

views

ChAMP methylation BMIQ

updated 6 months ago by peter.brederlo • 0 • written 5.0 years ago by moldach ▴ 20

votes

replies

1.8k

views

ChAMP champ methylation

updated 8 months ago by mike • 0 • written 4.1 years ago by jkong • 0

votes

replies

1.4k

views

minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.4 years ago by pm2015 • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Awards • All