Showing : microarray • reset
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sub-setting arrays
Microarray Microarray
updated 14.0 years ago by 6.7k • written 14.0 years ago by ★ 1.5k
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which statistical test to perform?
Microarray Microarray
updated 14.0 years ago by 21k • written 14.0 years ago by ★ 13k
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diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
14.1 years ago Juliet Hannah ▴ 360
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PhD position available in Innsbruck, Austria
Transcription Microarray Cancer Leukemia Transcription Microarray Cancer Leukemia
14.1 years ago Johannes Rainer ▴ 80
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topGO error, likely from topDiffGenes method of selection
Microarray topGO Microarray topGO
14.1 years ago oystercow ▴ 20
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1.0k
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topGO using de novo assembled transcriptome
Microarray topGO Microarray topGO
14.1 years ago oystercow ▴ 20
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2.3k
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gene enrichment analysis without a control sample
Microarray Microarray
14.1 years ago Wendy Qiao ▴ 360
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863
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problem in normalizing single channel gar file
Microarray Normalization Microarray Normalization
14.1 years ago Niraj Nepal ▴ 20
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1.5k
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Bioinformatics/biostatistics position at the Institute of Cancer Research, UK
Sequencing Microarray Genetics Cancer Sequencing Microarray Genetics Cancer
14.1 years ago Daniel Brewer ★ 1.9k
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Use of glm for multivariate logistic regression of microarray data
Microarray Regression Microarray Regression
14.1 years ago Ruppert Valentino ▴ 270
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1.2k
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Agi4x44Preprocess/Limma and number of significant p-values
Microarray Annotation limma Agi4x44PreProcess Microarray Annotation limma Agi4x44PreProcess
updated 14.1 years ago by ▴ 30 • written 14.1 years ago by ▴ 200
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Agi4x44Preprocess/Limma and number of significant p-values
Microarray Annotation limma Agi4x44PreProcess Microarray Annotation limma Agi4x44PreProcess
updated 14.1 years ago by ▴ 110 • written 14.1 years ago by ▴ 200
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1.2k
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limma printer layout
Microarray limma Microarray limma
updated 14.1 years ago by 53k • written 14.1 years ago by ▴ 740
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Problem with limma for two-color factorial design - Coefficients not estimable
Microarray Normalization limma ArrayExpress Microarray Normalization limma ArrayExpress
14.1 years ago Stephen Turner ▴ 290
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1.1k
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Regression analysis using expression microarray to determine phenotypic correlation
Microarray Regression Microarray Regression
14.1 years ago Ruppert Valentino ▴ 270
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12
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2.9k
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Illumina array analysis
Microarray Normalization limma Microarray Normalization limma
updated 14.1 years ago by ★ 3.6k • written 14.1 years ago by ▴ 310
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1.3k
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Postdoctoral position in biostatistics/bioinformatics/computational biology
Sequencing Microarray Sequencing Microarray
14.1 years ago Medvedovic, Mario medvedm ▴ 20
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1
reply
1.0k
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question about affymetrix array:ht-hg-u133acdf
Microarray cdf Microarray cdf
updated 14.1 years ago by 68k • written 14.1 years ago by ★ 13k
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.2 years ago Claude Chelala ▴ 40
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1.5k
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[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 14.2 years ago by ▴ 340 • written 14.2 years ago by ▴ 30
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limma suitability for correlated data
Microarray Prostate probe limma Microarray Prostate probe limma
14.2 years ago Max Mariasegaram ▴ 20
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8.6k
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heatmap.2 function and the scale option
Microarray Clustering Microarray Clustering
updated 14.2 years ago by ▴ 80 • written 14.2 years ago by ▴ 560
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[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 14.2 years ago by ▴ 150 • written 14.2 years ago by ▴ 30
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1
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1.5k
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using vsn to normalize protein array data
Microarray vsn Microarray vsn
updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 150
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1
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1.6k
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question about oligo package
Microarray Microarray
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 10
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3
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1.6k
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vsn on vsn
Microarray Normalization Microarray Normalization
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 320
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1
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1.2k
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how to get probe ids??
Microarray probe affy Microarray probe affy
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 40
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1.1k
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lumi and/or beadarray for getting beadSummary
Microarray Annotation EBImage Microarray Annotation EBImage
updated 14.2 years ago by ★ 6.6k • written 14.2 years ago by ★ 1.4k
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Differential Gene expression analysis help
Microarray Microarray
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 200
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Clustering of 30,000+ genes
Microarray Clustering genefilter GSCA Microarray Clustering genefilter GSCA
14.2 years ago Thorsten Forster ▴ 10
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1.6k
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Problem to store p-value of anova() method
Microarray Microarray
updated 14.2 years ago by ▴ 20 • written 14.2 years ago by ▴ 60
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3
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Clustering of 30,000+ genes
Microarray GSCA Microarray GSCA
updated 14.2 years ago by ★ 6.0k • written 14.2 years ago by ▴ 240
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1.5k
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"aggregate" function in R give non-unique values
Microarray Microarray
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 360
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2
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1.1k
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Agilent G4131F annotatin package
Microarray Annotation Microarray Annotation
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 380
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3
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6.4k
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median normalization
Microarray Normalization Microarray Normalization
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 580
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1.4k
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backgroundCorrect offset value
Microarray limma Microarray limma
14.3 years ago Gordon Smyth 53k
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1.5k
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a question on SPIA package
Microarray SPIA Microarray SPIA
updated 14.3 years ago by ▴ 650 • written 14.3 years ago by ▴ 380
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organism abbreviations (SPIA package)
Microarray Organism SPIA Microarray Organism SPIA
updated 14.3 years ago by ▴ 340 • written 14.3 years ago by ▴ 380
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Code for Block analysis in limma.
Microarray limma Microarray limma
14.3 years ago vas ▴ 40
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907
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block analysis in Limma
Microarray limma Microarray limma
14.3 years ago suri ghani ▴ 40
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1.5k
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Post-doctoral research fellowships in bioinformatics, Vienna, Austria and/or Brno, Czech Republic, 3-5 years
Microarray Microarray
14.3 years ago Dr. D. P. Kreil Boku ▴ 50
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3.3k
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Question about quantile normalization
Microarray Normalization limma PROcess Microarray Normalization limma PROcess
updated 14.3 years ago by ▴ 10 • written 14.3 years ago by ▴ 10
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1.5k
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Some problems in combining ExpressionSet objects with the combine() function
Microarray GO Cancer Colon affy limma Microarray GO Cancer Colon affy limma
14.4 years ago James W. MacDonald 68k
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1
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2.0k
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Some problems in combining ExpressionSet objects with the combine() function
Microarray Cancer Colon limma Microarray Cancer Colon limma
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 70
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1
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1.2k
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cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 10
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1
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1.7k
views
two color microarray normalization
Microarray limma Microarray limma
updated 14.4 years ago by ★ 1.1k • written 14.4 years ago by ▴ 20
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890
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two color array normalization
Microarray limma Microarray limma
14.4 years ago Bryan Cassone ▴ 20
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1.2k
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
14.4 years ago Segal, Corrinne ▴ 40
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1.9k
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using timecourse package with non-replicated time course
Microarray TimeCourse timecourse Microarray TimeCourse timecourse
updated 14.4 years ago by ▴ 440 • written 14.4 years ago by ▴ 30
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4
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1.8k
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Array data vs. Next Gen with log 2 Fold Change
RNASeq Microarray limma RNASeq Microarray limma
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 560
2,319 results • Page 21 of 47
Recent ...
Replies
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
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