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mirna-seq
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how to control age and gender effect in expression data using DESeq2
deseq2
rnaseq
mirna-seq
differential gene expression
written 6.2 years ago by
klalit1803
• 0
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA
mirna-seq
updated 7.1 years ago by
Jon Bråte
▴ 250 • written 7.2 years ago by
just
• 0
6
votes
7
replies
2.5k
views
Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
5.9 years ago
atakanekiz
▴ 30
0
votes
3
replies
1.0k
views
DESeq2: would 'contrast' work for serial experiments?
DESeq2
mirna-seq
small RNA-seq
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
CandiceChuDVM
▴ 40
1
vote
2
replies
4.4k
views
Multiple comparisons for DE analysis with DESeq2
deseq2
mirna-seq
experimental design
differential expression
updated 7.0 years ago by
Gavin Kelly
▴ 680 • written 7.0 years ago by
francesco.gandolfi
▴ 10
1
vote
2
replies
791
views
help for deseq2
mirna-seq
6.0 years ago • updated 5.9 years ago
ndiayediop2
• 0
0
votes
1
reply
703
views
How to find non-DE miRNAs using Deseq2 ?
deseq2
differentially expression
mirna-seq
mirna target prediction
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Björn
• 0
2
votes
3
replies
1.0k
views
Limma: Differential expression for micro RNA sequence data
mirna-seq
limma
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Michael Stone
• 0
0
votes
2
replies
923
views
help for package DESeq2 in R
mirna-seq
updated 5.9 years ago by
Levi Waldron
★ 1.1k • written 5.9 years ago by
ndiayediop2
• 0
9 results • Page
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Replies
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result
by
ATpoint
★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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