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mirna-seq
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how to control age and gender effect in expression data using DESeq2
deseq2
rnaseq
mirna-seq
differential gene expression
written 6.2 years ago by
klalit1803
• 0
2
votes
3
replies
1.0k
views
Limma: Differential expression for micro RNA sequence data
mirna-seq
limma
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Michael Stone
• 0
0
votes
2
replies
924
views
help for package DESeq2 in R
mirna-seq
updated 5.9 years ago by
Levi Waldron
★ 1.1k • written 5.9 years ago by
ndiayediop2
• 0
1
vote
2
replies
791
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help for deseq2
mirna-seq
6.0 years ago • updated 5.9 years ago
ndiayediop2
• 0
6
votes
7
replies
2.5k
views
Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
5.9 years ago
atakanekiz
▴ 30
0
votes
1
reply
703
views
How to find non-DE miRNAs using Deseq2 ?
deseq2
differentially expression
mirna-seq
mirna target prediction
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Björn
• 0
0
votes
3
replies
1.0k
views
DESeq2: would 'contrast' work for serial experiments?
DESeq2
mirna-seq
small RNA-seq
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
CandiceChuDVM
▴ 40
1
vote
2
replies
4.4k
views
Multiple comparisons for DE analysis with DESeq2
deseq2
mirna-seq
experimental design
differential expression
updated 7.0 years ago by
Gavin Kelly
▴ 680 • written 7.0 years ago by
francesco.gandolfi
▴ 10
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA
mirna-seq
updated 7.1 years ago by
Jon Bråte
▴ 250 • written 7.2 years ago by
just
• 0
9 results • Page
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Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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