Showing : mirna-seq • reset
2
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Limma: Differential expression for micro RNA sequence data
mirna-seq limma
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
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2
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913
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help for package DESeq2 in R
mirna-seq
updated 5.9 years ago by ★ 1.1k • written 5.9 years ago by • 0
6
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7
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Differences between RTCGA and TCGAbiolinks data
r survival analysis rtcga tcgabiolinks mirna-seq
5.9 years ago atakanekiz ▴ 30
0
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How to find non-DE miRNAs using Deseq2 ?
deseq2 differentially expression mirna-seq mirna target prediction
updated 5.9 years ago by 41k • written 5.9 years ago by • 0
1
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2
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789
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help for deseq2
mirna-seq
6.0 years ago • updated 5.9 years ago ndiayediop2 • 0
1
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9
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5.3k
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how to control age and gender effect in expression data using DESeq2
deseq2 rnaseq mirna-seq differential gene expression
written 6.1 years ago by • 0
0
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3
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1.0k
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DESeq2: would 'contrast' work for serial experiments?
DESeq2 mirna-seq small RNA-seq
updated 6.3 years ago by 41k • written 6.3 years ago by ▴ 40
1
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2
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4.4k
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Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 7.0 years ago by ▴ 680 • written 7.0 years ago by ▴ 10
0
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4
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4.5k
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miRNA-seq data analysis
miRNA mirna-seq
updated 7.1 years ago by ▴ 250 • written 7.1 years ago by • 0
9 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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