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mirna-seq
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6
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Differences between RTCGA and TCGAbiolinks data
r
survival analysis
rtcga
tcgabiolinks
mirna-seq
5.9 years ago
atakanekiz
▴ 30
2
votes
3
replies
1.0k
views
Limma: Differential expression for micro RNA sequence data
mirna-seq
limma
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Michael Stone
• 0
1
vote
9
replies
5.3k
views
how to control age and gender effect in expression data using DESeq2
deseq2
rnaseq
mirna-seq
differential gene expression
written 6.2 years ago by
klalit1803
• 0
1
vote
2
replies
4.4k
views
Multiple comparisons for DE analysis with DESeq2
deseq2
mirna-seq
experimental design
differential expression
updated 7.0 years ago by
Gavin Kelly
▴ 680 • written 7.0 years ago by
francesco.gandolfi
▴ 10
1
vote
2
replies
791
views
help for deseq2
mirna-seq
6.0 years ago • updated 5.9 years ago
ndiayediop2
• 0
0
votes
2
replies
921
views
help for package DESeq2 in R
mirna-seq
updated 5.9 years ago by
Levi Waldron
★ 1.1k • written 5.9 years ago by
ndiayediop2
• 0
0
votes
1
reply
700
views
How to find non-DE miRNAs using Deseq2 ?
deseq2
differentially expression
mirna-seq
mirna target prediction
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
Björn
• 0
0
votes
3
replies
1.0k
views
DESeq2: would 'contrast' work for serial experiments?
DESeq2
mirna-seq
small RNA-seq
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
CandiceChuDVM
▴ 40
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA
mirna-seq
updated 7.1 years ago by
Jon Bråte
▴ 250 • written 7.2 years ago by
just
• 0
9 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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