Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
model
•
reset
1
vote
3
replies
903
views
baseMean differencies according to the model
Deseq2
model
7.8 years ago
jrivera
• 0
1
vote
7
replies
2.2k
views
Limma linear models
limma
goodness
fit
linear
model
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
nonCodingGene
▴ 10
1
vote
8
replies
1.5k
views
EdgeR model not of full rank
EdgeR
rank
model
6.8 years ago
philip.freda
• 0
0
votes
1
reply
715
views
LRT test in DESeq2 decide on the level of comparisons
DESeq2
LRT
Model
updated 2.1 years ago by
Michael Love
41k • written 2.1 years ago by
JaneDoe
• 0
0
votes
1
reply
3.0k
views
DESeq2 model with blocking factor + interaction term
deseq2
model
updated 8.8 years ago by
Simon Anders
★ 3.7k • written 8.8 years ago by
da.de
▴ 30
5
votes
2
replies
1.8k
views
DESeq2 design matrix for timecourse
deseq2
experimental design
timecourse
rnaseq
model
updated 7.5 years ago by
Michael Love
41k • written 7.5 years ago by
athief
▴ 20
0
votes
2
replies
941
views
Design formula in DESeq2
model
BatchEffect
hidden
Design
DESeq2
2.5 years ago
m.glymenaki
• 0
14
votes
19
replies
8.9k
views
DESeq2 Model Design
DESeq2
linear model
model
updated 3.0 years ago by
Michael Love
41k • written 9.4 years ago by
andrew.j.skelton73
▴ 370
5
votes
5
replies
2.3k
views
edgeR : How to test differential exon expression on case/control study across all time points when accounting for the within subject variability?
egdeR
multiple time points
model.matrix
differential exon usage
model
6.8 years ago
heikki.sarin
▴ 10
4
votes
8
replies
2.2k
views
edgeR: How to set model for glmQLFTest in time-course experiment (compared to glmLRT?
edgeR
edger "glmqlftest()"
timecourse
model
updated 6.8 years ago by
Ryan C. Thompson
★ 7.9k • written 6.8 years ago by
heikki.sarin
▴ 10
3
votes
8
replies
2.0k
views
Differential drug dosage effect between two genotypes in limma
limma
dose-response
linear model
model
formula
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
biominer
▴ 10
0
votes
2
replies
927
views
Diffbind with multiple blocking factors
diffbind
blocking
model
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 4.5 years ago by
melnuesch
▴ 10
1
vote
3
replies
1.0k
views
interaction models DESeq2
deseq2
interaction
model
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
aec
▴ 90
1
vote
1
reply
1.1k
views
DESeq2 Error in checkFullRank(modelMatrix)
DESeq2
ErrorincheckFullRank(modelMatrix)
model
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
Isabelle
• 0
0
votes
1
reply
1.4k
views
Proper dataset form and model for DEXeq analysis
dexseq
rna-seq
model.matrix
model
updated 6.8 years ago by
Michael Love
41k • written 6.8 years ago by
heikki.sarin
▴ 10
0
votes
0
replies
1.2k
views
How construct a model for case-control time-course experiment in DEXseq?
dexseq
timecourse
model.matrix
model
6.8 years ago
heikki.sarin
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
United States,
10 minutes ago
France,
10 minutes ago
United States,
20 minutes ago
Ireland,
43 minutes ago
Germany,
1 hour ago
Traffic: 619 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6