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710

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DESeq2 LRT Model

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by JaneDoe • 0

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940

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model BatchEffect hidden Design DESeq2

2.5 years ago m.glymenaki • 0

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8.9k

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DESeq2 linear model model

updated 3.0 years ago by Michael Love 41k • written 9.4 years ago by andrew.j.skelton73 ▴ 370

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1.0k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by Isabelle • 0

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926

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diffbind blocking model

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.5 years ago by melnuesch ▴ 10

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1.0k

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deseq2 interaction model

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by aec ▴ 90

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2.0k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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2.2k

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edgeR edger "glmqlftest()" timecourse model

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by heikki.sarin ▴ 10

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2.3k

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egdeR multiple time points model.matrix differential exon usage model

6.8 years ago heikki.sarin ▴ 10

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1.2k

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dexseq timecourse model.matrix model

6.8 years ago heikki.sarin ▴ 10

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1.4k

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dexseq rna-seq model.matrix model

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by heikki.sarin ▴ 10

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1.5k

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EdgeR rank model

6.8 years ago philip.freda • 0

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1.8k

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deseq2 experimental design timecourse rnaseq model

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by athief ▴ 20

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903

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Deseq2 model

7.8 years ago jrivera • 0

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3.0k

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deseq2 model

updated 8.8 years ago by Simon Anders ★ 3.7k • written 8.8 years ago by da.de ▴ 30

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2.2k

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limma goodness fit linear model

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by nonCodingGene ▴ 10

16 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…

Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k

The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …

Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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