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mouse4302
•
reset
0
votes
4
replies
1.4k
views
Guidance to handle .CEL file in R
R
.cel fiels
microarray
mouse4302
5.9 years ago
aacharya
• 0
0
votes
0
replies
877
views
mouse4302.db mapping discrepancies between as.list() and select()
r
mouse4302
gene ontology
8.3 years ago
mark614
• 0
3
votes
2
replies
1.5k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi
mouse4302
affymetrixchip
annotationdata
R
updated 8.6 years ago by
James W. MacDonald
66k • written 8.6 years ago by
koreebay
• 0
0
votes
2
replies
1.6k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation
mouse4302
annotate
Annotation
mouse4302
annotate
updated 9.9 years ago by
James W. MacDonald
66k • written 9.9 years ago by
Rao,Xiayu
▴ 550
0
votes
4
replies
1.8k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation
mouse4302
probe
oligo
Annotation
mouse4302
probe
oligo
updated 9.9 years ago by
James W. MacDonald
66k • written 9.9 years ago by
Rao,Xiayu
▴ 550
0
votes
1
reply
1.5k
views
Error message using arrayweights
GO
Cancer
mouse4302
KEGGREST
GO
Cancer
mouse4302
KEGGREST
updated 10.5 years ago by
Matthew Ritchie
▴ 1000 • written 10.5 years ago by
Richard Friedman
▴ 80
0
votes
1
reply
2.4k
views
Limma makeContrasts - incorporating known confounder
mouse4302
limma
mouse4302
limma
updated 10.5 years ago by
Bernd Klaus
▴ 610 • written 10.5 years ago by
Ed Mountjoy
▴ 10
0
votes
3
replies
1.8k
views
error and warning message with blocked samples with Limma
GO
Cancer
mouse4302
limma
GO
Cancer
mouse4302
limma
updated 11.2 years ago by
Gordon Smyth
51k • written 11.2 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
1.3k
views
BiomaRt: getLDS keeps returning NULL
mouse4302
probe
affy
biomaRt
mouse4302
probe
affy
biomaRt
updated 11.4 years ago by
Steffen Durinck
▴ 540 • written 11.4 years ago by
Steven
▴ 110
0
votes
3
replies
2.5k
views
Filtering out duplicate probes in Affy data
Annotation
mouse4302
annotate
affy
Annotation
mouse4302
annotate
affy
updated 11.4 years ago by
James W. MacDonald
66k • written 11.4 years ago by
hsharm03@students.poly.edu
▴ 180
0
votes
3
replies
2.0k
views
BiomaRt: getLDS keeps returning NULL
mouse4302
biomaRt
mouse4302
biomaRt
updated 11.5 years ago by
Nolwenn Le Meur
▴ 10 • written 11.6 years ago by
Guest User
★ 13k
0
votes
3
replies
1.3k
views
mouse4302.db and can't find gene symbol annotation
Annotation
mouse4302
probe
Annotation
mouse4302
probe
updated 11.7 years ago by
James W. MacDonald
66k • written 11.7 years ago by
Andrew Yee
▴ 350
0
votes
4
replies
1.5k
views
AffyID mapping question
Transcription
mouse4302
Transcription
mouse4302
updated 12.0 years ago by
Marc Carlson
★ 7.2k • written 12.0 years ago by
Guest User
★ 13k
0
votes
1
reply
3.6k
views
KEGG pathway heat map
mouse4302
limma
mouse4302
limma
updated 12.1 years ago by
Felipe Antonio Riveroll Aguirre
▴ 10 • written 12.1 years ago by
Felipe Riveroll Aguirre
▴ 30
0
votes
1
reply
810
views
Biocore Data Team : package mouse4302.db bug
mouse4302
mouse4302
updated 13.3 years ago by
Marc Carlson
★ 7.2k • written 13.3 years ago by
Vojtech Kulvait
▴ 30
0
votes
0
replies
890
views
affymetrix annotation
Annotation
mouse4302
affy
Annotation
mouse4302
affy
13.5 years ago
arne.mueller@novartis.com
▴ 200
0
votes
6
replies
1.6k
views
affymetrix annotation
mouse4302
affy
mouse4302
affy
updated 13.5 years ago by
Tim Yates
▴ 250 • written 13.5 years ago by
arne.mueller@novartis.com
▴ 200
0
votes
1
reply
815
views
question about CDF file
mouse4302
cdf
mouse4302
cdf
updated 14.1 years ago by
Sean Davis
21k • written 14.1 years ago by
jchl tu
▴ 10
0
votes
1
reply
923
views
Multiple genes per probeset
Annotation
Cancer
mouse4302
annaffy
ASSIGN
Annotation
Cancer
mouse4302
annaffy
ASSIGN
updated 14.2 years ago by
James W. MacDonald
66k • written 14.2 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
1.1k
views
filtering in GSEABase package
GO
hgu95av2
mouse4302
PROcess
Category
GO
hgu95av2
mouse4302
PROcess
Category
updated 14.2 years ago by
James F. Reid
▴ 610 • written 14.2 years ago by
jason0701
▴ 190
0
votes
0
replies
836
views
only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO
mouse4302
cdf
affy
GO
mouse4302
cdf
affy
14.7 years ago
Jarek Bryk
▴ 110
0
votes
3
replies
1.7k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a
hgu133plus2
mouse4302
convert
hgu133a
hgu133plus2
mouse4302
convert
updated 15.1 years ago by
Martin Morgan
25k • written 15.1 years ago by
David Rossell
▴ 100
0
votes
3
replies
987
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation
GO
hgu133plus2
moe430b
mouse4302
Annotation
GO
hgu133plus2
moe430b
mouse4302
updated 15.1 years ago by
Marc Carlson
★ 7.2k • written 15.1 years ago by
John Coulthard
▴ 170
0
votes
5
replies
2.4k
views
error in ls() unused arguments
mouse4302
affyPLM
mouse4302
affyPLM
updated 15.4 years ago by
Laurent Gautier
★ 2.3k • written 15.4 years ago by
Wijchers, Patrick
▴ 40
0
votes
0
replies
800
views
[Fwd: Re: Duplicate probesets in mouse4302]
mouse4302
cdf
mouse4302
cdf
15.4 years ago
Naira Naouar
▴ 40
0
votes
2
replies
961
views
Duplicate probesets in mouse4302
mouse4302
mouse4302
updated 15.4 years ago by
Henrik Bengtsson
★ 2.4k • written 15.4 years ago by
Paul Geeleher
★ 1.3k
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation
mouse4302
simpleaffy
GLAD
Annotation
mouse4302
simpleaffy
GLAD
updated 15.4 years ago by
James W. MacDonald
66k • written 15.4 years ago by
Marietta Herrmann
▴ 40
0
votes
0
replies
824
views
gseattperm return all NA
mouse4302
Category
mouse4302
Category
15.7 years ago
Saroj Mohapatra
▴ 450
0
votes
0
replies
881
views
Moe430A and Moe430B join
moe430a
moe430b
mouse4302
gcrma
marray
moe430a
moe430b
mouse4302
gcrma
marray
15.9 years ago
Matyas Flemr
▴ 10
0
votes
2
replies
1.1k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 16.0 years ago by
Alex Sanchez
▴ 20 • written 16.0 years ago by
Straubhaar, Juerg
▴ 300
0
votes
4
replies
1.1k
views
mouse4302.db vs mouse 4302
Annotation
Cancer
mouse4302
Annotation
Cancer
mouse4302
updated 16.2 years ago by
Marc Carlson
★ 7.2k • written 16.2 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1000
views
mouse4302,db_2.0.2 in AffylmGUI
Annotation
Cancer
mouse4302
affy
limma
Annotation
Cancer
mouse4302
affy
limma
updated 16.2 years ago by
Keith Satterley
▴ 450 • written 16.2 years ago by
Richard Friedman
★ 2.0k
0
votes
5
replies
1.3k
views
Genefilter parameters for mouse 430 2
Cancer
mouse4302
genefilter
limma
gcrma
Cancer
mouse4302
genefilter
limma
gcrma
updated 16.3 years ago by
James W. MacDonald
66k • written 16.3 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
977
views
annotation on mouse4302
Annotation
mouse4302
Annotation
mouse4302
updated 16.7 years ago by
Steffen
▴ 500 • written 16.7 years ago by
Mayte Suarez-Farinas
▴ 510
0
votes
0
replies
958
views
mouse4302
Annotation
mouse4302
probe
affy
Annotation
mouse4302
probe
affy
18.0 years ago
Nianhua Li
▴ 870
0
votes
2
replies
748
views
Question about the appropriate uniververse for GOHyperG or hyperGtable
GO
mouse4302
probe
GO
mouse4302
probe
updated 18.0 years ago by
James W. MacDonald
66k • written 18.0 years ago by
Scott Ochsner
▴ 300
0
votes
1
reply
910
views
Annaffy problem loading metadata
mouse4302
annaffy
mouse4302
annaffy
18.1 years ago
Bornman, Daniel M
▴ 110
0
votes
3
replies
2.6k
views
AFFX-BioB-3_at annotation
hgu133plus2
mouse4302
hgu133plus2
mouse4302
18.2 years ago
Wu, Xiwei
▴ 350
0
votes
1
reply
852
views
Access to Affy chip annotation data in affylmGUI
mouse4302
affylmGUI
mouse4302
affylmGUI
updated 18.4 years ago by
Seth Falcon
★ 7.4k • written 18.4 years ago by
Lee Parry
▴ 10
0
votes
2
replies
1.0k
views
moe430v2 annotation package?
Annotation
GO
mouse4302
cdf
probe
Annotation
GO
mouse4302
cdf
probe
updated 19.1 years ago by
John Zhang
★ 2.9k • written 19.1 years ago by
Fatima Nunez
▴ 30
0
votes
6
replies
1.5k
views
can't instal MetaData package "mouse4302"
Annotation
mouse4302
Annotation
mouse4302
updated 19.3 years ago by
Seth Falcon
★ 7.4k • written 19.3 years ago by
Gordon Smyth
51k
0
votes
3
replies
1.2k
views
latest devel GO package not built in R2.0.0
GO
mouse4302
affy
annaffy
GO
mouse4302
affy
annaffy
updated 19.7 years ago by
John Zhang
★ 2.9k • written 19.7 years ago by
Dick Beyer
★ 1.4k
42 results • Page
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Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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