Showing : mouse4302 • reset
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Guidance to handle .CEL file in R
R .cel fiels microarray mouse4302
7.3 years ago aacharya • 0
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1.1k
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mouse4302.db mapping discrepancies between as.list() and select()
r mouse4302 gene ontology
9.7 years ago mark614 • 0
3
votes
2
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1.9k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 10.0 years ago by 68k • written 10.0 years ago by • 0
0
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2
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1.9k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation mouse4302 annotate Annotation mouse4302 annotate
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 550
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4
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2.2k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 550
0
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1
reply
1.8k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 11.9 years ago by ▴ 1000 • written 11.9 years ago by ▴ 80
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1
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2.7k
views
Limma makeContrasts - incorporating known confounder
mouse4302 limma mouse4302 limma
updated 11.9 years ago by ▴ 610 • written 11.9 years ago by ▴ 10
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3
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2.1k
views
error and warning message with blocked samples with Limma
GO Cancer mouse4302 limma GO Cancer mouse4302 limma
updated 12.6 years ago by 53k • written 12.6 years ago by ★ 2.0k
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2
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1.5k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 12.8 years ago by ▴ 540 • written 12.8 years ago by ▴ 110
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3
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2.9k
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Filtering out duplicate probes in Affy data
Annotation mouse4302 annotate affy Annotation mouse4302 annotate affy
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 180
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3
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2.4k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 biomaRt mouse4302 biomaRt
updated 12.9 years ago by ▴ 10 • written 12.9 years ago by ★ 13k
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3
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1.6k
views
mouse4302.db and can't find gene symbol annotation
Annotation mouse4302 probe Annotation mouse4302 probe
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 350
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4
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1.9k
views
AffyID mapping question
Transcription mouse4302 Transcription mouse4302
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ★ 13k
0
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1
reply
4.1k
views
KEGG pathway heat map
mouse4302 limma mouse4302 limma
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 30
0
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1
reply
1.0k
views
Biocore Data Team : package mouse4302.db bug
mouse4302 mouse4302
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 30
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1.1k
views
affymetrix annotation
Annotation mouse4302 affy Annotation mouse4302 affy
14.8 years ago arne.mueller@novartis.com ▴ 200
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6
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2.0k
views
affymetrix annotation
mouse4302 affy mouse4302 affy
updated 14.9 years ago by ▴ 250 • written 14.9 years ago by ▴ 200
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1
reply
989
views
question about CDF file
mouse4302 cdf mouse4302 cdf
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 10
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1
reply
1.2k
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 15.5 years ago by 68k • written 15.5 years ago by ★ 2.0k
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1.3k
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filtering in GSEABase package
GO hgu95av2 mouse4302 PROcess Category GO hgu95av2 mouse4302 PROcess Category
updated 15.6 years ago by ▴ 610 • written 15.6 years ago by ▴ 190
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1.1k
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only 9-digit refseq IDs when using custom CDF for mouse4302 array
GO mouse4302 cdf affy GO mouse4302 cdf affy
16.1 years ago Jarek Bryk ▴ 110
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3
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2.1k
views
Can BioC still convert exprSet to ExpressionSet?
hgu133a hgu133plus2 mouse4302 convert hgu133a hgu133plus2 mouse4302 convert
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 100
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3
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1.3k
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 170
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5
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2.9k
views
error in ls() unused arguments
mouse4302 affyPLM mouse4302 affyPLM
updated 16.7 years ago by ★ 2.3k • written 16.7 years ago by ▴ 40
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993
views
[Fwd: Re: Duplicate probesets in mouse4302]
mouse4302 cdf mouse4302 cdf
16.7 years ago Naira Naouar ▴ 40
0
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2
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1.2k
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Duplicate probesets in mouse4302
mouse4302 mouse4302
updated 16.8 years ago by ★ 2.4k • written 16.8 years ago by ★ 1.3k
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1.6k
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Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 40
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1.0k
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gseattperm return all NA
mouse4302 Category mouse4302 Category
17.1 years ago Saroj Mohapatra ▴ 450
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1.1k
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Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
17.3 years ago Matyas Flemr ▴ 10
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2
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1.4k
views
namespace error with goProfiles package
GO mouse4302 goProfiles GO mouse4302 goProfiles
updated 17.4 years ago by ▴ 20 • written 17.4 years ago by ▴ 300
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4
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1.4k
views
mouse4302.db vs mouse 4302
Annotation Cancer mouse4302 Annotation Cancer mouse4302
updated 17.6 years ago by ★ 7.2k • written 17.6 years ago by ★ 2.0k
0
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3
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1.3k
views
mouse4302,db_2.0.2 in AffylmGUI
Annotation Cancer mouse4302 affy limma Annotation Cancer mouse4302 affy limma
updated 17.6 years ago by ▴ 450 • written 17.6 years ago by ★ 2.0k
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5
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1.6k
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Genefilter parameters for mouse 430 2
Cancer mouse4302 genefilter limma gcrma Cancer mouse4302 genefilter limma gcrma
updated 17.6 years ago by 68k • written 17.6 years ago by ★ 2.0k
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2
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1.2k
views
annotation on mouse4302
Annotation mouse4302 Annotation mouse4302
updated 18.1 years ago by ▴ 500 • written 18.1 years ago by ▴ 510
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1.1k
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mouse4302
Annotation mouse4302 probe affy Annotation mouse4302 probe affy
19.4 years ago Nianhua Li ▴ 870
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2
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965
views
Question about the appropriate uniververse for GOHyperG or hyperGtable
GO mouse4302 probe GO mouse4302 probe
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 300
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1.2k
views
Annaffy problem loading metadata
mouse4302 annaffy mouse4302 annaffy
19.5 years ago Bornman, Daniel M ▴ 110
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3
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3.3k
views
AFFX-BioB-3_at annotation
hgu133plus2 mouse4302 hgu133plus2 mouse4302
19.6 years ago Wu, Xiwei ▴ 350
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1
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1.1k
views
Access to Affy chip annotation data in affylmGUI
mouse4302 affylmGUI mouse4302 affylmGUI
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 10
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2
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1.3k
views
moe430v2 annotation package?
Annotation GO mouse4302 cdf probe Annotation GO mouse4302 cdf probe
updated 20.5 years ago by ★ 2.9k • written 20.5 years ago by ▴ 30
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6
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1.9k
views
can't instal MetaData package "mouse4302"
Annotation mouse4302 Annotation mouse4302
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by 53k
0
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3
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1.5k
views
latest devel GO package not built in R2.0.0
GO mouse4302 affy annaffy GO mouse4302 affy annaffy
updated 21.1 years ago by ★ 2.9k • written 21.1 years ago by ★ 1.4k
42 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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