Showing : multtest • reset
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error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 10
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[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ★ 2.2k
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problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
19.1 years ago Jenny Drnevich ★ 2.2k
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
19.3 years ago Pedro López Romero ▴ 360
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problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
19.3 years ago Kimpel, Mark W ▴ 890
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subset eset by row broken
Survival rgu34a multtest affy Survival rgu34a multtest affy
19.4 years ago Kimpel, Mark W ▴ 890
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problems with GO package data
GO Cancer hgu95av2 probe Biobase annotate genefilter multtest graph GOstats GO Cancer
19.6 years ago Yu-An Dong ▴ 40
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mt.teststat (multtest)
multtest multtest
19.7 years ago Ann Hess ▴ 340
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1
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1.2k
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ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 890
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mt.teststat (multtest) BUG?
multtest multtest
19.7 years ago Ann Hess ▴ 340
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3
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Limma then Annaffy?
multtest limma multtest limma
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 140
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3
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passing my data to siggenes package
multtest siggenes multtest siggenes
updated 19.9 years ago by ▴ 900 • written 19.9 years ago by ▴ 140
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Bioconductor Digest, Vol 31, Issue 7
Microarray Annotation Cancer probe multtest affy limma marray Microarray Annotation affy
20.0 years ago Shruti Subramaniam ▴ 30
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Fisher test in multtest
multtest multtest
20.2 years ago Pierre-Luc Brunelle ▴ 10
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6
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1.9k
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Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 20.2 years ago by ★ 7.4k • written 20.2 years ago by ★ 1.4k
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multtest
multtest multtest
20.3 years ago Yasemin Akdas ▴ 10
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9
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2.7k
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multtest problem...
multtest multtest
updated 20.4 years ago by ▴ 110 • written 20.4 years ago by ▴ 430
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Cox MTP question
Microarray Regression multtest Microarray Regression multtest
20.4 years ago kpollard ▴ 110
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2
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3.9k
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multtest and Cox regression
Regression multtest Regression multtest
updated 20.4 years ago by ▴ 10 • written 20.4 years ago by ▴ 140
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question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
20.5 years ago ivan.borozan@utoronto.ca ▴ 80
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multtest bug fixed
multtest multtest
20.5 years ago kpollard ▴ 110
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1.4k
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multtest Paired T-test
multtest multtest
20.5 years ago kpollard ▴ 110
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3
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1.1k
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multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
20.5 years ago Francois Pepin ★ 1.3k
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902
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Multtest distributions
multtest multtest
20.5 years ago Ken Termiso ▴ 250
0
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7
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1.9k
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questions on results from mt.maxT (multtest)
multtest affy multtest affy
updated 20.6 years ago by ▴ 130 • written 20.6 years ago by ▴ 300
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Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 20.6 years ago by ▴ 300 • written 20.6 years ago by ▴ 20
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Using Bioconductor data sets
GO multtest GO multtest
20.8 years ago michael watson IAH-C ★ 3.4k
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1
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820
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analysis post gcrma (factdesign? multtest? siggenes?)
multtest multtest
updated 20.9 years ago by 68k • written 20.9 years ago by ▴ 100
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error in loading affy (R 2.0), Thank you
Normalization GO Clustering moe430a moe430b probe Ruuid rhdf5 multtest affy graph limma
20.9 years ago Pintilie, Melania ▴ 50
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views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by ▴ 100
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How do I get p-values from multtest?
multtest convert multtest convert
updated 20.9 years ago by ▴ 10 • written 20.9 years ago by ★ 3.4k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.9 years ago rgentleman ★ 5.5k
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1.4k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
20.9 years ago Goeman, J.J. MSTAT ▴ 150
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1
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.0 years ago Matthew Hannah ▴ 940
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago Matthew Hannah ▴ 940
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2x3 ANOVA
Microarray multtest gcrma factDesign PROcess Microarray multtest gcrma factDesign PROcess
21.2 years ago Jeff Lande ▴ 110
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limma/multtest comparison question
multtest limma multtest limma
21.3 years ago Sean Davis 21k
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How to filter up- and down-regulated genes?
multtest multtest
updated 21.3 years ago by 21k • written 21.3 years ago by ▴ 60
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(GC)RMA when there are BIG treatment effects.
multtest affy gcrma multtest affy gcrma
21.3 years ago Matthew Hannah ▴ 940
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downstream analysis of differentially expressed genes
Microarray Cancer multtest affy limma siggenes factDesign Microarray Cancer multtest
21.4 years ago James W. MacDonald 68k
0
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1
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685
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where to find the document of 'multtest.intro"
multtest multtest
updated 21.4 years ago by ★ 5.5k • written 21.4 years ago by ▴ 30
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[altirriba@hotmail.com: Design in factDesign] (fwd)
multtest limma factDesign multtest limma factDesign
updated 21.4 years ago by ▴ 350 • written 21.4 years ago by ▴ 40
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[altirriba@hotmail.com: Design in factDesign] (fwd)
multtest limma factDesign multtest limma factDesign
updated 21.4 years ago by ▴ 630 • written 21.4 years ago by ▴ 350
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Questions on finding DE genes by Limma
multtest limma multtest limma
21.5 years ago rwin qian ▴ 50
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0
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1.0k
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FW: more multtest problems
multtest multtest
21.5 years ago michael watson IAH-C ★ 3.4k
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1.0k
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more multtest problems
multtest multtest
21.5 years ago michael watson IAH-C ★ 3.4k
0
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4
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1.5k
views
Multtest
multtest multtest
updated 21.5 years ago by 68k • written 21.5 years ago by ▴ 120
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3
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1.6k
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Questions about multtest
multtest multtest
updated 21.6 years ago by ▴ 550 • written 21.6 years ago by ★ 3.4k
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4
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1.3k
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problems with multtest
Annotation multtest Annotation multtest
updated 21.6 years ago by 68k • written 21.6 years ago by ★ 3.4k
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0
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659
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mt.teststat
multtest multtest
21.7 years ago Sun, Zhifu ▴ 20
141 results • Page 2 of 3
Recent ...
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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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