Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
normalized counts
•
reset
1
vote
2
replies
1.4k
views
scran/scater Normalized matrix
scran
scater
normalized counts
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
Radek
▴ 90
0
votes
2
replies
1.4k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 6.2 years ago by
Steve Lianoglou
★ 13k • written 6.2 years ago by
anaQ
• 0
0
votes
0
replies
1.6k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
6.4 years ago
agdif
▴ 10
4
votes
2
replies
8.3k
views
DESeq2 : normalized counts
rnaseq
deseq2
normalized counts
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
JoannaF
▴ 10
0
votes
14
replies
5.5k
views
DESeq2 count normalization
deseq2
normalization
normalized counts
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
naets_matthias
• 0
1
vote
4
replies
1.8k
views
Normalized counts after fitting linear model with batch effects - edgeR
edger
batch effect
normalized counts
updated 7.0 years ago by
Ryan C. Thompson
★ 7.9k • written 7.0 years ago by
Yahan
• 0
4
votes
2
replies
1.5k
views
Normalize to additional variable (brain weight) in DESeq2
deseq2
cqn
normalization
normalized counts
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
mark.ebbert
• 0
2
votes
1
reply
1.2k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
7.3 years ago
salvocomplicazioni1
• 0
1
vote
2
replies
1.8k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 7.5 years ago by
Günter Klambauer
▴ 540 • written 7.5 years ago by
falk.zakrzewski
• 0
1
vote
3
replies
1.6k
views
DESeq2: Do basemean values take into account interaction effects?
deseq2
counts
normalized counts
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
snamjoshi87
▴ 40
2
votes
2
replies
2.1k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
8.5 years ago
Jane Merlevede
▴ 90
1
vote
6
replies
3.1k
views
Diffbind EdgeR and DESeq2 normalization
diffbind
normalized counts
8.6 years ago
GFM
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Votes
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
Awards
• All
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Popular Question
to
Robert Ivanek
▴ 750
Locations
• All
The city by the bay,
3 minutes ago
United States,
13 minutes ago
WEHI, Melbourne, Australia,
44 minutes ago
Germany,
56 minutes ago
Canada,
1 hour ago
Traffic: 665 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6