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Showing :
normalized counts
•
reset
1
vote
2
replies
1.4k
views
scran/scater Normalized matrix
scran
scater
normalized counts
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
Radek
▴ 90
0
votes
2
replies
1.4k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 6.2 years ago by
Steve Lianoglou
★ 13k • written 6.2 years ago by
anaQ
• 0
0
votes
0
replies
1.6k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
6.4 years ago
agdif
▴ 10
4
votes
2
replies
8.3k
views
DESeq2 : normalized counts
rnaseq
deseq2
normalized counts
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
JoannaF
▴ 10
0
votes
14
replies
5.5k
views
DESeq2 count normalization
deseq2
normalization
normalized counts
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
naets_matthias
• 0
1
vote
4
replies
1.8k
views
Normalized counts after fitting linear model with batch effects - edgeR
edger
batch effect
normalized counts
updated 7.0 years ago by
Ryan C. Thompson
★ 7.9k • written 7.0 years ago by
Yahan
• 0
4
votes
2
replies
1.5k
views
Normalize to additional variable (brain weight) in DESeq2
deseq2
cqn
normalization
normalized counts
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
mark.ebbert
• 0
2
votes
1
reply
1.2k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
7.3 years ago
salvocomplicazioni1
• 0
1
vote
2
replies
1.8k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 7.5 years ago by
Günter Klambauer
▴ 540 • written 7.5 years ago by
falk.zakrzewski
• 0
1
vote
3
replies
1.6k
views
DESeq2: Do basemean values take into account interaction effects?
deseq2
counts
normalized counts
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
snamjoshi87
▴ 40
2
votes
2
replies
2.1k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
8.5 years ago
Jane Merlevede
▴ 90
1
vote
6
replies
3.1k
views
Diffbind EdgeR and DESeq2 normalization
diffbind
normalized counts
8.6 years ago
GFM
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Answer: Find exact GRanges match keeping metadata columns
by
Michael Love
43k
You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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Axel Klenk
★ 1.1k
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shepherl
4.1k
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Gordon Smyth
52k
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bastien_chassagnol
• 0
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Maria Doyle
▴ 100
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