Showing : normalized counts • reset
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scran/scater Normalized matrix
scran scater normalized counts
updated 7.0 years ago by ★ 29k • written 7.0 years ago by ▴ 90
0
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2
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1.6k
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Get normalized COUNTS Deseq2
deseq2 normalized counts
updated 7.1 years ago by ★ 13k • written 7.1 years ago by • 0
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0
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1.8k
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DESeq2: Extract mean normalized log2 counts by level
normalized counts log2
7.3 years ago agdif ▴ 10
4
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2
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8.6k
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DESeq2 : normalized counts
rnaseq deseq2 normalized counts
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 10
0
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14
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6.4k
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DESeq2 count normalization
deseq2 normalization normalized counts
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
1
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4
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2.2k
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Normalized counts after fitting linear model with batch effects - edgeR
edger batch effect normalized counts
updated 8.0 years ago by ★ 7.9k • written 8.0 years ago by • 0
4
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2
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1.7k
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Normalize to additional variable (brain weight) in DESeq2
deseq2 cqn normalization normalized counts
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
2
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1
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1.4k
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Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts grch37 grch38 r bioconductor
8.2 years ago salvocomplicazioni1 • 0
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2
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2.1k
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cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 8.5 years ago by ▴ 540 • written 8.5 years ago by • 0
1
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3
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1.9k
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DESeq2: Do basemean values take into account interaction effects?
deseq2 counts normalized counts
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 40
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2
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Analysis of shRNA screen data
shrna edger deseq2 differential expression normalized counts
9.4 years ago Jane Merlevede ▴ 90
1
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6
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3.7k
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Diffbind EdgeR and DESeq2 normalization
diffbind normalized counts
9.5 years ago GFM ▴ 20
12 results • Page 1 of 1
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Comment: Converting Probe IDs to HGNC symbols by nana • 0
Converting probe IDs to HGNC gene symbols depends on the platform the probes come from (Affymetrix, Illumina, Agilent, etc.). Below are the…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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