Bioconductor Normalized counts

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1.7k

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scran scater normalized counts

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by Radek ▴ 90

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1.6k

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deseq2 normalized counts

updated 7.2 years ago by Steve Lianoglou ★ 13k • written 7.2 years ago by anaQ • 0

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1.9k

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normalized counts log2

7.4 years ago agdif ▴ 10

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8.7k

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rnaseq deseq2 normalized counts

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by JoannaF ▴ 10

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6.5k

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deseq2 normalization normalized counts

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by naets_matthias • 0

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2.2k

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edger batch effect normalized counts

updated 8.0 years ago by Ryan C. Thompson ★ 7.9k • written 8.0 years ago by Yahan • 0

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1.8k

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deseq2 cqn normalization normalized counts

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by mark.ebbert • 0

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normalized counts grch37 grch38 r bioconductor

8.3 years ago salvocomplicazioni1 • 0

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2.1k

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cn.mops log normalized counts table

updated 8.5 years ago by Günter Klambauer ▴ 540 • written 8.5 years ago by falk.zakrzewski • 0

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1.9k

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deseq2 counts normalized counts

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by snamjoshi87 ▴ 40

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2.5k

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shrna edger deseq2 differential expression normalized counts

9.5 years ago Jane Merlevede ▴ 90

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3.8k

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diffbind normalized counts

9.6 years ago GFM ▴ 20

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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

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Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

A: DESeq2 - VST eliminates zero values

Comment: Normalise to a housekeeping gene in DESEq2

Comment: limpa analysis advice

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Popular Question to James W. MacDonald 68k