Bioconductor Normalized counts

Showing : normalized counts • reset

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1.4k

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scran scater normalized counts

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Radek ▴ 90

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1.3k

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deseq2 normalized counts

updated 6.2 years ago by Steve Lianoglou ★ 13k • written 6.2 years ago by anaQ • 0

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1.6k

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normalized counts log2

6.4 years ago agdif ▴ 10

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8.3k

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rnaseq deseq2 normalized counts

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by JoannaF ▴ 10

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5.4k

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deseq2 normalization normalized counts

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by naets_matthias • 0

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1.8k

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edger batch effect normalized counts

updated 7.0 years ago by Ryan C. Thompson ★ 7.9k • written 7.0 years ago by Yahan • 0

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1.5k

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deseq2 cqn normalization normalized counts

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by mark.ebbert • 0

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1.2k

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normalized counts grch37 grch38 r bioconductor

7.3 years ago salvocomplicazioni1 • 0

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1.8k

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cn.mops log normalized counts table

updated 7.5 years ago by Günter Klambauer ▴ 540 • written 7.5 years ago by falk.zakrzewski • 0

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1.6k

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deseq2 counts normalized counts

updated 8.5 years ago by Steve Lianoglou ★ 13k • written 8.5 years ago by snamjoshi87 ▴ 40

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2.1k

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shrna edger deseq2 differential expression normalized counts

8.5 years ago Jane Merlevede ▴ 90

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3.1k

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diffbind normalized counts

8.6 years ago • updated 8.5 years ago GFM ▴ 20

12 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0