Bioconductor Normalized counts

Showing : normalized counts • reset

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1.6k

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scran scater normalized counts

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by Radek ▴ 90

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1.6k

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deseq2 normalized counts

updated 6.9 years ago by Steve Lianoglou ★ 13k • written 6.9 years ago by anaQ • 0

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1.7k

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normalized counts log2

7.1 years ago agdif ▴ 10

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8.5k

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rnaseq deseq2 normalized counts

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by JoannaF ▴ 10

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6.2k

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deseq2 normalization normalized counts

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by naets_matthias • 0

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2.1k

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edger batch effect normalized counts

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by Yahan • 0

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deseq2 cqn normalization normalized counts

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by mark.ebbert • 0

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normalized counts grch37 grch38 r bioconductor

8.1 years ago salvocomplicazioni1 • 0

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2.0k

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cn.mops log normalized counts table

updated 8.3 years ago by Günter Klambauer ▴ 540 • written 8.3 years ago by falk.zakrzewski • 0

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1.8k

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deseq2 counts normalized counts

updated 9.3 years ago by Steve Lianoglou ★ 13k • written 9.3 years ago by snamjoshi87 ▴ 40

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2.3k

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shrna edger deseq2 differential expression normalized counts

9.3 years ago Jane Merlevede ▴ 90

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diffbind normalized counts

9.3 years ago GFM ▴ 20

12 results • Page 1 of 1

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Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

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Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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