Showing : organism • reset
2
votes
3
replies
2.1k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ★ 1.0k
2
votes
4
replies
2.7k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 10.9 years ago by ★ 3.9k • written 10.9 years ago by ▴ 140
1
vote
1
reply
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
1
vote
4
replies
1.8k
views
Consensus sequence
Organism
updated 9.7 years ago by 16k • written 9.7 years ago by 65k
1
vote
3
replies
1.7k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 10.7 years ago by ★ 7.2k • written 10.7 years ago by ▴ 220
1
vote
3
replies
2.4k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 40
0
votes
4
replies
1.3k
views
Annotation data package is not being created
Annotation Organism PROcess Annotation Organism PROcess
updated 20.4 years ago by ★ 2.9k • written 20.4 years ago by ▴ 70
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
0
votes
4
replies
4.3k
views
An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 20
0
votes
1
reply
1.1k
views
AnnBuilder links to unigene
GO Organism AnnBuilder PROcess GO Organism AnnBuilder PROcess
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 160
0
votes
3
replies
1.5k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 90
0
votes
0
replies
759
views
Problems with installning a package built with AnnBuilder
Annotation Organism Annotation Organism
19.5 years ago Johan Lindberg ▴ 270
0
votes
7
replies
1.5k
views
I have trouble running the AnnBuilder Vignette
Cancer Organism AnnBuilder Cancer Organism AnnBuilder
updated 19.5 years ago by 65k • written 19.5 years ago by ★ 2.0k
0
votes
1
reply
996
views
bug in resourcerer2BioC in Resourcerer package
Organism Resourcerer Organism Resourcerer
updated 19.4 years ago by ★ 2.9k • written 19.5 years ago by ★ 1.3k
0
votes
0
replies
1.1k
views
loading SMD...
Cancer Breast Organism probe Category Cancer Breast Organism probe Category
19.9 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
1.4k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges Rsubread easyRNASeq GO
updated 10.4 years ago by ▴ 320 • written 10.4 years ago by 50k
0
votes
4
replies
1.0k
views
missing AnnBuilder parser
Annotation Organism annotate AnnBuilder Annotation Organism annotate AnnBuilder
updated 19.1 years ago by ★ 2.9k • written 19.1 years ago by ★ 1.3k
0
votes
2
replies
1.4k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 540
0
votes
1
reply
1.2k
views
organism = mouse or Mus Musculus in AnnBuilder
Microarray Organism Mus musculus AnnBuilder Microarray Organism Mus musculus AnnBuilder
updated 18.9 years ago by ★ 2.9k • written 18.9 years ago by ▴ 140
0
votes
4
replies
1.1k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 250
0
votes
1
reply
563
views
AnnBuilder/ABPkgBuilder
Cancer Organism Cancer Organism
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ★ 2.9k
0
votes
2
replies
865
views
AnnBuilder problem?
Organism Biobase annotate AnnBuilder Organism Biobase annotate AnnBuilder
updated 18.5 years ago by ▴ 780 • written 18.5 years ago by ▴ 50
0
votes
1
reply
907
views
Resourcerer warnings
GO Organism reposTools AnnBuilder Resourcerer GO Organism reposTools AnnBuilder
18.5 years ago Francois Pepin ★ 1.3k
0
votes
1
reply
833
views
help aobut AnnBuilder
GO Organism AnnBuilder GO Organism AnnBuilder
updated 18.3 years ago by ▴ 780 • written 18.3 years ago by ▴ 30
0
votes
1
reply
702
views
Error with AnnBuilder ABPkgBuilder
GO Organism annotate AnnBuilder GO Organism annotate AnnBuilder
updated 18.3 years ago by ▴ 780 • written 18.3 years ago by ▴ 20
0
votes
4
replies
1.4k
views
Error while using AnnBuilder
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 160
0
votes
1
reply
854
views
AnnBuilder error
GO Organism annotate AnnBuilder GO Organism annotate AnnBuilder
updated 18.2 years ago by ▴ 780 • written 18.2 years ago by ▴ 510
0
votes
2
replies
1.1k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 18.1 years ago by ▴ 780 • written 18.1 years ago by ★ 1.4k
0
votes
7
replies
1.6k
views
annotation package for chicken affyprobes
Annotation Organism Gallus gallus probe AnnBuilder Annotation Organism Gallus gallus probe
updated 17.7 years ago by ▴ 180 • written 17.7 years ago by ▴ 870
0
votes
0
replies
782
views
Comparing to background
Organism vsn limma Organism vsn limma
17.5 years ago Sturgill, David NIH/NIDDK [C] ▴ 10
0
votes
0
replies
757
views
Re: MetaData 1.6.0
Annotation GO Organism hgu95av2 mguatlas5k mgug4121a rgug4130a probe Category Annotation
20.0 years ago John Zhang ★ 2.9k
0
votes
4
replies
1.4k
views
cluster a set of genes based on another set of genes
Organism limma Organism limma
updated 17.2 years ago by ▴ 280 • written 17.2 years ago by ▴ 450
0
votes
2
replies
1.1k
views
ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
GO Cancer Organism AnnBuilder GO Cancer Organism AnnBuilder
updated 17.3 years ago by 16k • written 17.3 years ago by ★ 2.9k
0
votes
1
reply
739
views
Problem with ABPkgBuilder function
Annotation GO Organism applera Annotation GO Organism applera
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 500
0
votes
3
replies
1.2k
views
Building the tomato annotation library(Affy)
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
17.0 years ago Groot, Philip de ▴ 630
0
votes
1
reply
727
views
problem with annbuilder
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ▴ 10
0
votes
5
replies
1.4k
views
AnnBuilder problem with custom List of genes
Annotation Organism probe AnnBuilder Annotation Organism probe AnnBuilder
16.7 years ago claudio.is@libero.it ▴ 210
0
votes
2
replies
1.1k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 130
0
votes
0
replies
680
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
16.7 years ago Lyudmila Mikhaylova ▴ 20
0
votes
2
replies
1.1k
views
AnnBuilder: problem with kegg url?
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 20
0
votes
0
replies
827
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
16.6 years ago Yihuan Xu ▴ 130
0
votes
5
replies
1.6k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.6 years ago by ★ 1.1k
0
votes
0
replies
1.8k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
16.5 years ago McGee, Monnie ▴ 300
0
votes
8
replies
1.2k
views
Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
0
votes
3
replies
1.6k
views
CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 16.3 years ago by ★ 2.4k • written 16.3 years ago by ▴ 110
0
votes
1
reply
1.2k
views
Is it possible to use RMA on Agilent Data
Organism Arabidopsis thaliana probe affy oligo Organism Arabidopsis thaliana probe affy
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by ▴ 110
0
votes
1
reply
948
views
ABPkgBuilder question
Organism AnnBuilder Organism AnnBuilder
updated 15.7 years ago by ★ 7.2k • written 15.8 years ago by ▴ 40
0
votes
2
replies
1.3k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 15.7 years ago by ▴ 220 • written 15.7 years ago by ★ 7.2k
0
votes
3
replies
837
views
Finding Annotation of CEL file formats
Organism probe Organism probe
updated 15.6 years ago by ★ 3.9k • written 15.6 years ago by ▴ 230
0
votes
0
replies
846
views
ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
GO Organism AnnBuilder GO Organism AnnBuilder
17.3 years ago Martin Kircher ▴ 20
50 results • Page 1 of 1
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
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Answer: How to save the DEXSeq results
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Comment: minfi support of illumina Infinium methylationEPIC v2.0
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