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outlier
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4
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5
replies
6.5k
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outlier detection of RNAseq samples
deseq2
rnaseq
PCA
hierarchical clustering
outlier
7.4 years ago
wd
▴ 30
1
vote
7
replies
4.6k
views
DESeq2 outlier detection not filtering
DESeq2
outlier
RNASeq
updated 9.4 years ago by
Michael Love
41k • written 9.4 years ago by
kenneth.daily
• 0
1
vote
8
replies
1.9k
views
[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq
DESeq2
outlier
counts
DE analysis
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
DcL-A
• 0
2
votes
3
replies
1.5k
views
RNAseq outlier is a critical sample
rnaseq
outlier
statistics
batch effect
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
grastalt27
• 0
1
vote
1
reply
1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics
Microarray
Outlier
updated 8.5 years ago by
Wolfgang Huber
★ 13k • written 8.5 years ago by
horcsct
▴ 10
0
votes
2
replies
1.2k
views
Which genes are outliers in DESeq2?
DESeq2
RNAseq
outlier
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
James
• 0
1
vote
3
replies
745
views
DE analysis outlier removal
deseq2
outlier
normalization
removal
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
knholm
• 0
0
votes
1
reply
444
views
Outlier removal outcome
Outlier
updated 13 months ago by
ATpoint
★ 4.1k • written 14 months ago by
sanchita.bhattacharya
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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