Bioconductor Output

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4.3k

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msa alignement output sorted

8.3 years ago Olorin ▴ 50

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4.8k

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voomWithQualityWeights output

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by harelarik ▴ 60

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2.0k

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genesis output score

updated 5.6 years ago by Stephanie M. Gogarten ▴ 890 • written 5.6 years ago by lassana.a.samarakoon ▴ 10

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7.0k

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deseq2 gene columns output

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by amyfm ▴ 10

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1.7k

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MEDIPS Output

7.0 years ago vjain • 0

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2.3k

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msa decipher output prettyPrint

updated 4.7 years ago by UBod ▴ 300 • written 4.7 years ago by matamunee • 0

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1.6k

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cytofkit cytof write.csv output

updated 8.5 years ago by chen_hao ▴ 30 • written 8.5 years ago by cjackson13 • 0

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1.1k

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output difference

2.9 years ago Jamie • 0

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limma voom edgeR toptable output

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by heikki.sarin ▴ 10

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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