Showing : pairwisealignment • reset
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM samtools pairwisealignment alignment blastn
6.4 years ago ktehmsen • 0
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3
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1.7k
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How to find multiple overlaps with pairwiseAlignment()?
biostrings pairwisealignment
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 10
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4
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1.7k
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Query with Biostrings pairwise alignment output positon
biostrings alignment pairwisealignment
updated 7.1 years ago by 16k • written 7.1 years ago by • 0
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2
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4.0k
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Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
7.9 years ago lordbleys • 0
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1.2k
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Translate to aminoacid, align pairwise and un-translate back to DNA
translation pairwisealignment
8.4 years ago igferres • 0
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1
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1.1k
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Mapping sequence features to alignments
pairwisealignment indel
updated 8.5 years ago by 16k • written 8.5 years ago by ▴ 10
3
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2
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1.7k
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pairwiseAlignments coordinate mapping?
biostrings pairwisealignment
updated 8.7 years ago by 16k • written 8.7 years ago by ★ 13k
2
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1
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1.2k
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Error in score() function on pairwiseAlignment()
biostrings pairwisealignment
updated 8.7 years ago by 4.1k • written 8.7 years ago by • 0
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1
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1.4k
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pairwiseAlignment() - Similarity NA% ?
biostrings pairwisealignment
updated 9.3 years ago by 16k • written 9.3 years ago by • 0
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3
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1.4k
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indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment biostrings
9.3 years ago vincent.plagnol ▴ 10
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inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings pairwisealignment
9.3 years ago vincent.plagnol ▴ 10
4
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5
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3.1k
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global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings pairwiseAlignment
updated 10.2 years ago by 16k • written 10.2 years ago by ▴ 120
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Comment: Differential variability modelling with vst() expression by convincing.shark.jqvy • 0
Your approach to differential variability modeling using vst() looks promising! It mirrors the challenge of mastering levels in [Geometry D…
Answer: DESeq2 Heatmap by James W. MacDonald 67k
Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…
Answer: Improve performance of qusage aggregateGeneSet by James W. MacDonald 67k
This support site is meant mostly to help people with questions about using Bioconductor packages rather than posting code improvements. I …
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
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