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pairwisealignment
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.7 years ago
ktehmsen
• 0
0
votes
3
replies
1.4k
views
How to find multiple overlaps with pairwiseAlignment()?
biostrings
pairwisealignment
updated 6.3 years ago by
Hervé Pagès
16k • written 6.3 years ago by
kgorczak
▴ 10
0
votes
4
replies
1.4k
views
Query with Biostrings pairwise alignment output positon
biostrings
alignment
pairwisealignment
updated 6.4 years ago by
Hervé Pagès
16k • written 6.4 years ago by
dhwani2410
• 0
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
7.2 years ago
lordbleys
• 0
0
votes
0
replies
997
views
Translate to aminoacid, align pairwise and un-translate back to DNA
translation
pairwisealignment
7.7 years ago
igferres
• 0
0
votes
1
reply
883
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
oliwindram
▴ 10
3
votes
2
replies
1.4k
views
pairwiseAlignments coordinate mapping?
biostrings
pairwisealignment
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
Steve Lianoglou
★ 13k
2
votes
1
reply
1.0k
views
Error in score() function on pairwiseAlignment()
biostrings
pairwisealignment
updated 8.0 years ago by
shepherl
3.9k • written 8.0 years ago by
jdydu
• 0
0
votes
1
reply
1.3k
views
pairwiseAlignment() - Similarity NA% ?
biostrings
pairwisealignment
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
boris.steipe
• 0
2
votes
3
replies
1.2k
views
indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment
biostrings
8.6 years ago
vincent.plagnol
▴ 10
0
votes
2
replies
1.6k
views
inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings
pairwisealignment
8.6 years ago
vincent.plagnol
▴ 10
4
votes
5
replies
2.6k
views
global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings
pairwiseAlignment
updated 9.5 years ago by
Hervé Pagès
16k • written 9.5 years ago by
branislav misovic
▴ 120
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Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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