Showing : permutation • reset
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Study Modules significance (or Modules Preservation) in ONE network
modulePreservation WGCNA modules significance permutation
7.8 years ago • updated 5.9 years ago harelarik ▴ 60
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permutation and randomization tests
permutation randomization
5.9 years ago Bogdan ▴ 670
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Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
7.5 years ago ge2sasag • 0
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permutation with plink
illumina plink permutation
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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Differential expression analysis: Permutation Test
deseq2 limma edger permutation
updated 2.2 years ago by 53k • written 9.9 years ago by ▴ 90
5 results • Page 1 of 1
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Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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