Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
piano
•
reset
0
votes
3
replies
1.7k
views
piano runGSA with input from DESEQ2
deseq2
gene ontology
piano
7.5 years ago
simonp.snoeck
• 0
3
votes
3
replies
1.6k
views
Error while running piano's runGSA
piano
runGSA
updated 7.9 years ago by
Leif Väremo
▴ 70 • written 7.9 years ago by
rubi
▴ 110
0
votes
1
reply
1.2k
views
Mixing list from Piano package output
Piano
List
updated 9.1 years ago by
Leif Väremo
▴ 70 • written 9.1 years ago by
nonCodingGene
▴ 10
2
votes
2
replies
1.2k
views
Using GeneSetCollection objects of GSEABase in piano package
piano
gseabase
7.3 years ago
Lluís Revilla Sancho
▴ 730
9
votes
7
replies
20k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 5 months ago by
amin8w
▴ 10 • written 6.8 years ago by
sina.nassiri
▴ 130
3
votes
2
replies
1.1k
views
How is microarray normalization done in PIANO?
piano
microarray
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
rf
• 0
0
votes
9
replies
1.7k
views
unable to load rsbml for piano reporter metabolite analysis
rsbml
piano
libsbml
gene set enrichment analysis
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
jan.strauss
• 0
2
votes
4
replies
1.3k
views
Running time of piano's runGSA
piano
runGSA
runtime
updated 7.3 years ago by
Leif Väremo
▴ 70 • written 7.3 years ago by
rubi
▴ 110
3
votes
8
replies
2.5k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy
limma
piano
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
abolfazl.nikakhtar
• 0
0
votes
5
replies
2.3k
views
loadGSC() Piano package
piano
updated 9.2 years ago by
Leif Väremo
▴ 70 • written 9.2 years ago by
nonCodingGene
▴ 10
10 results • Page
1 of 1
Recent ...
Replies
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go! And for comparisons between the cohorts I presume duplicateCorrelation with standar…
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
Probably. I would not expect such large fold changes. But without seeing your code, who knows?
Votes
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards
• All
Popular Question
to
neilzhao
▴ 30
Popular Question
to
ATpoint
★ 4.1k
Teacher
to
Michael Love
42k
Popular Question
to
Haibo Liu
• 0
Popular Question
to
HS
▴ 10
Locations
• All
Australia,
just now
United States,
13 minutes ago
WEHI, Melbourne, Australia,
27 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 458 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6