Showing : plotMA • reset
4
votes
3
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2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization deseq2 plotMA meanSDplot
8.8 years ago aravenscraft • 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma plotMA
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 50
1
vote
1
reply
634
views
plotMA difference using or not a sub matrix
matrixsubset DESeq2 plotMA
updated 3.1 years ago by 42k • written 3.1 years ago by ▴ 10
1
vote
5
replies
666
views
Mixed up sample info with plotPCA
plotMA ggplot2 plotPCA DESeq2
updated 7 months ago by 42k • written 7 months ago by • 0
1
vote
8
replies
2.7k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2 plotma
6.7 years ago Yvan Wenger ▴ 50
1
vote
1
reply
4.9k
views
MA plot in R
rstudio r plotMA
6.9 years ago g.k • 0
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2 plotMA rnaseq logfoldchange
updated 6.2 years ago by 42k • written 6.2 years ago by • 0
1
vote
2
replies
974
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2 rnaseq plotMA deseq rna-seq
updated 8.2 years ago by 42k • written 8.2 years ago by • 0
0
votes
1
reply
902
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2 plotMA rnaseq community analysis asymmetry
updated 4.2 years ago by 42k • written 4.2 years ago by • 0
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Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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