Bioconductor PlotPCA

Showing : plotPCA • reset

votes

replies

41k

views

plotPCA deseq2 labels

updated 7.3 years ago by Federico Marini ▴ 150 • written 7.3 years ago by al-ash ▴ 50

votes

7.2k

views

deseq2 plotpca PCa

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by lirongrossmann ▴ 80

votes

replies

6.5k

views

plotpca DESeq2

2.3 years ago bjen731 ▴ 10

votes

replies

2.3k

views

DESeq2 plotPCA

2.3 years ago • updated 2.2 years ago synat.keam • 0

votes

replies

3.1k

views

DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

votes

replies

1.4k

views

plotPCA DESeq2 RUVSeq removebatcheffect()

3.0 years ago elizabethe819 • 0

vote

replies

643

views

plotMA ggplot2 plotPCA DESeq2

updated 7 months ago by Michael Love 42k • written 7 months ago by sara.jacobson • 0

vote

876

views

DESeq2 RNASeq plotpca

updated 3.3 years ago by Michael Love 42k • written 3.3 years ago by s1760083 • 0

votes

replies

380

views

Rstudio plotPCA DESeq2

5 months ago yee • 0

votes

replies

975

views

pca plotpca

7.6 years ago marianarochadesouza • 0

votes

replies

3.2k

views

deseq2 rlog variancestabilizingtransformation plotpca pca

6.6 years ago lirongrossmann ▴ 80

votes

646

views

deseq2 PlotPCA draw.triple.venn

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by N. Perera • 0

votes

616

views

deseq2 plotpca

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by snp31 • 0

votes

replies

1.0k

views

deseq2 biplot plotpca

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by ecg1g15 ▴ 20

votes

replies

3.1k

views

plotPCA PCA

updated 13 months ago by hediatnani • 0 • written 13 months ago by Yijing • 0

votes

replies

1.5k

views

deseq2 plotPCA PCA rna-seq

8.0 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

Replies

Answer: normalization using Deseq2 by ATpoint ★ 4.1k

counts(dds, normalized=TRUE)

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…

Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Awards • All