Bioconductor Plotpca

Showing : plotpca • reset

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Rstudio plotPCA DESeq2

2.0 years ago • updated 24 months ago yee • 0

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plotMA ggplot2 plotPCA DESeq2

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by sara.jacobson • 0

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plotPCA PCA

updated 2.6 years ago by hediatnani • 0 • written 2.7 years ago by Yijing • 0

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DESeq2 plotPCA

updated 17 months ago by Daniele • 0 • written 3.8 years ago by synat.keam • 0

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plotpca DESeq2

3.9 years ago bjen731 ▴ 10

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plotPCA DESeq2 RUVSeq removebatcheffect()

4.6 years ago elizabethe819 • 0

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DESeq2 RNASeq plotpca

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by s1760083 • 0

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deseq2 biplot plotpca

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by ecg1g15 ▴ 30

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deseq2 PlotPCA draw.triple.venn

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by N. Perera • 0

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973

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deseq2 plotpca

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by lirongrossmann ▴ 80

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deseq2 rlog variancestabilizingtransformation plotpca pca

8.2 years ago lirongrossmann ▴ 80

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DESeq2 plotPCA rlog transformation vsd

8.3 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 8.9 years ago by Federico Marini ▴ 180 • written 8.9 years ago by al-ash ▴ 50

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pca plotpca

9.1 years ago marianarochadesouza • 0

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deseq2 plotPCA PCA rna-seq

9.5 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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