Bioconductor Plotpca

Showing : plotpca • reset

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990

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Rstudio plotPCA DESeq2

16 months ago yee • 0

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1.2k

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plotMA ggplot2 plotPCA DESeq2

updated 18 months ago by Michael Love 43k • written 18 months ago by sara.jacobson • 0

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5.6k

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plotPCA PCA

updated 24 months ago by hediatnani • 0 • written 2.0 years ago by Yijing • 0

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DESeq2 plotPCA

updated 9 months ago by Daniele • 0 • written 3.2 years ago by synat.keam • 0

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plotpca DESeq2

3.2 years ago bjen731 ▴ 10

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.9 years ago elizabethe819 • 0

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1.2k

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DESeq2 RNASeq plotpca

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by s1760083 • 0

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1.4k

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deseq2 biplot plotpca

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by ecg1g15 ▴ 30

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829

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deseq2 PlotPCA draw.triple.venn

updated 6.5 years ago by Michael Love 43k • written 6.6 years ago by N. Perera • 0

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851

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deseq2 plotpca

updated 6.5 years ago by Michael Love 43k • written 6.6 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by lirongrossmann ▴ 80

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3.8k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.5 years ago lirongrossmann ▴ 80

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3.6k

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DESeq2 plotPCA rlog transformation vsd

7.7 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 8.2 years ago by Federico Marini ▴ 180 • written 8.2 years ago by al-ash ▴ 50

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pca plotpca

8.5 years ago marianarochadesouza • 0

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deseq2 plotPCA PCA rna-seq

8.8 years ago newsomew13 • 0

16 results • Page 1 of 1

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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