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plotpca
•
reset
0
votes
2
replies
1.4k
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
2.2 years ago
yee
• 0
1
vote
5
replies
1.7k
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
sara.jacobson
• 0
0
votes
3
replies
6.4k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 2.8 years ago by
hediatnani
• 0 • written 2.9 years ago by
Yijing
• 0
3
votes
5
replies
3.8k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
updated 20 months ago by
Daniele
• 0 • written 4.0 years ago by
synat.keam
• 0
3
votes
3
replies
11k
views
Adding sample label to PCA plot
plotpca
DESeq2
4.1 years ago
bjen731
▴ 10
2
votes
2
replies
2.2k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
4.8 years ago
elizabethe819
• 0
1
vote
1
reply
1.4k
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
s1760083
• 0
0
votes
3
replies
1.7k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
ecg1g15
▴ 30
0
votes
1
reply
990
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
N. Perera
• 0
0
votes
1
reply
1.0k
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
snp31
• 0
12
votes
1
reply
8.5k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
4.3k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
8.4 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.9k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
8.5 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
50k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 9.1 years ago by
Federico Marini
▴ 180 • written 9.1 years ago by
al-ash
▴ 50
0
votes
0
replies
1.3k
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
9.3 years ago
marianarochadesouza
• 0
0
votes
3
replies
2.1k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
9.7 years ago
newsomew13
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available
by
Tikaaa2sahaaaq2c
• 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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Michael Love
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James W. MacDonald
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rcavalca
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James Aiden
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