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plotpca
•
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0
votes
6
replies
3.2k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
6.6 years ago
lirongrossmann
▴ 80
1
vote
5
replies
641
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
42k • written 7 months ago by
sara.jacobson
• 0
14
votes
5
replies
41k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.3 years ago by
Federico Marini
▴ 150 • written 7.3 years ago by
al-ash
▴ 50
2
votes
4
replies
2.3k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
2.3 years ago • updated 2.2 years ago
synat.keam
• 0
2
votes
4
replies
3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
6.8 years ago
Jane Merlevede
▴ 90
0
votes
3
replies
1.5k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.0 years ago
newsomew13
• 0
0
votes
3
replies
1.0k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
ecg1g15
▴ 20
0
votes
3
replies
3.1k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 13 months ago by
hediatnani
• 0 • written 13 months ago by
Yijing
• 0
3
votes
3
replies
6.4k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.3 years ago
bjen731
▴ 10
2
votes
2
replies
1.4k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.0 years ago
elizabethe819
• 0
0
votes
2
replies
377
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
5 months ago
yee
• 0
1
vote
1
reply
875
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.3 years ago by
Michael Love
42k • written 3.3 years ago by
s1760083
• 0
0
votes
1
reply
645
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
N. Perera
• 0
0
votes
1
reply
616
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
snp31
• 0
12
votes
1
reply
7.2k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
lirongrossmann
▴ 80
0
votes
0
replies
974
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
7.6 years ago
marianarochadesouza
• 0
16 results • Page
1 of 1
Recent ...
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Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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DevelopingHippo
• 0
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to
Robert Castelo
★ 3.3k
Popular Question
to
Gyan Prakash Mishra
▴ 10
Popular Question
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Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
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