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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
14.7 years ago Philippe Serhal ▴ 10
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6
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1.8k
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beadarray: Running BASH for 120 sections
PROcess beadarray PROcess beadarray
updated 14.8 years ago by ★ 6.6k • written 14.8 years ago by ▴ 220
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3
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3.0k
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Script to save plots in Pdf format ( DNAcopy)
CGH PROcess CGH PROcess
updated 14.8 years ago by ▴ 750 • written 14.8 years ago by ▴ 280
0
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Rgraphviz windows version incompatible with current Graphviz
Rgraphviz PROcess Rgraphviz PROcess
14.8 years ago Kasper Daniel Hansen ★ 6.5k
0
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4
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5.3k
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Bioconductor with Affymetrix Mouse Gene 1.0 ST
Annotation cdf PROcess safe Annotation cdf PROcess safe
14.8 years ago M. Emily Merrill ▴ 20
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2
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DESeq variance stabilisation and clustering
Genetics Clustering PROcess DESeq Genetics Clustering PROcess DESeq
updated 14.8 years ago by ▴ 30 • written 14.8 years ago by ▴ 20
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3.2k
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goseq KEGG testing?
Pathways GO PROcess Category goseq Pathways GO PROcess Category goseq
updated 14.8 years ago by ▴ 40 • written 14.8 years ago by ★ 2.0k
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1.2k
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BioC 2.8 New Package Submission Deadline - 3/23/2011
PROcess PROcess
14.8 years ago Chao-Jen Wong ▴ 580
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1
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1.0k
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Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
Cancer RdbiPgSQL PROcess Cancer RdbiPgSQL PROcess
updated 14.9 years ago by ▴ 30 • written 14.9 years ago by 25k
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Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
RdbiPgSQL PROcess RdbiPgSQL PROcess
14.9 years ago Aszodi,Andras ▴ 30
0
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913
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Error loading package RdbiPgSQL / R2.12.1/ Mac OS X 10.6.6
RdbiPgSQL PROcess RdbiPgSQL PROcess
14.9 years ago Dan Tenenbaum ★ 8.2k
0
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949
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Enriched GO questions
Annotation GO annotate PROcess Annotation GO annotate PROcess
14.9 years ago Julie Zhu ★ 4.3k
0
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2
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1.0k
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package for protein MS analysis (SELDI-TOF)
Proteomics GO PROcess Proteomics GO PROcess
updated 14.9 years ago by 1.6k • written 14.9 years ago by ★ 4.1k
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votes
1
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995
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exporting mas5 data with xps
Annotation PROcess Annotation PROcess
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 30
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Job: Biostatistics/Bioinformatics, University of Cambridge
Genetics Arabidopsis thaliana PROcess Genetics Arabidopsis thaliana PROcess
15.0 years ago Krys Kelly ▴ 270
0
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1
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866
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exporting mas5 data with xps
PROcess PROcess
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 30
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13
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2.1k
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Problem with affy mas5 on Linux but not Windows...
PROcess PROcess
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 150
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2.5k
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sorting FASTQ file by ID
PROcess PROcess
15.0 years ago Ramzi TEMANNI ▴ 160
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1.0k
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Cyclic loess
Normalization PROcess Normalization PROcess
15.0 years ago viritha kaza ▴ 580
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1.4k
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beadarray: how to create BeadStudio output after createBeadSummaryData
PROcess beadarray ArrayExpress PROcess beadarray ArrayExpress
15.0 years ago Cei Abreu-Goodger ▴ 830
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3
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1.4k
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About package beadarray
Normalization PROcess beadarray Normalization PROcess beadarray
updated 15.0 years ago by ★ 1.1k • written 15.0 years ago by ▴ 60
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2
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1.4k
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Procedure
Yeast PROcess Yeast PROcess
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 240
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6
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2.0k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 110
0
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0
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1.9k
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Bioconductor Digest, Vol 95, Issue 7
PROcess SRAdb PROcess SRAdb
15.0 years ago Jack Zhu ▴ 170
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2
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1.4k
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graph::join discards node and edge attributes
graph PROcess graph PROcess
updated 15.1 years ago by ★ 1.1k • written 15.1 years ago by ▴ 340
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0
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1.5k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
15.1 years ago W. A. Green ▴ 40
0
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1
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1.5k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
updated 15.1 years ago by ▴ 40 • written 15.1 years ago by ▴ 310
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votes
1
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1.3k
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Pairwise Comparison error
Prostate PROcess Prostate PROcess
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 40
0
votes
1
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734
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Help for model.matrix() in microarray analysis
Microarray limma PROcess Microarray limma PROcess
updated 15.1 years ago by ★ 6.8k • written 15.2 years ago by ▴ 60
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2
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1.0k
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R/Bioconductor validation
PROcess PROcess
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 230
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1
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1.2k
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biocLite() partial install of pakcages issue
PROcess PROcess
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 100
0
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3
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2.8k
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avereps problem
probe limma PROcess probe limma PROcess
updated 15.2 years ago by 53k • written 15.2 years ago by ▴ 70
0
votes
0
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1.3k
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Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
15.2 years ago Neel Aluru ▴ 460
0
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4
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1.9k
views
faster way to get differential calls from pileup?
SNP Sequencing PROcess SNP Sequencing PROcess
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 260
0
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3
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1.7k
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EBImage installs but won't load on Mac OS 10.6.4
GUI PROcess convert EBImage GUI PROcess convert EBImage
updated 15.2 years ago by ▴ 310 • written 15.3 years ago by ▴ 40
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7
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2.0k
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ecoli2.db
Annotation PROcess Annotation PROcess
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 120
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3
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1.3k
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Illumina QC using ShortRead
PROcess PROcess
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 30
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3
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1.7k
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AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 15.3 years ago by ▴ 230 • written 15.3 years ago by ▴ 910
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8
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2.5k
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AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
15.3 years ago Mark Cowley ▴ 910
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4
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1.7k
views
about illumina data
Microarray PROcess Microarray PROcess
updated 15.3 years ago by 6.7k • written 15.4 years ago by ▴ 90
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0
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1.3k
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Bioinformatician/Software Engineer position available at Umass Medical School
Genetics GO Cancer PROcess Genetics GO Cancer PROcess
15.4 years ago Julie Zhu ★ 4.3k
0
votes
0
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1.3k
views
Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
15.4 years ago Orfe, Lisa ▴ 20
0
votes
1
reply
1.3k
views
Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.4 years ago Gordon Smyth 53k
0
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0
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1.2k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.4 years ago Orfe, Lisa ▴ 20
2
votes
3
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2.7k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ★ 1.0k
0
votes
4
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1.4k
views
Affy ST 1.0 gene chip background probes cut off set up
affy PROcess xps affy PROcess xps
updated 15.4 years ago by ★ 3.9k • written 15.4 years ago by ▴ 40
0
votes
0
replies
2.2k
views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription PROcess GOstats cycle Transcription PROcess GOstats cycle
15.4 years ago zhidong yuan ▴ 10
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1
reply
1.6k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer BSgenome PROcess GLAD BSgenome Cancer BSgenome PROcess GLAD BSgenome
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 550
0
votes
2
replies
7.5k
views
Error in Heatmap: Could not find function "heatmap.2"
PROcess marray PROcess marray
updated 15.5 years ago by ▴ 830 • written 15.5 years ago by ▴ 40
0
votes
1
reply
867
views
write.XStringView/write.XStringSet highly inefficient
PROcess PROcess
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 550
651 results • Page 6 of 14
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Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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