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process
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reset
0
votes
0
replies
1.3k
views
KEGG pathway layout/rendering
Pathways
graph
PROcess
Pathways
graph
PROcess
17.2 years ago
Sim, Fraser
▴ 350
0
votes
0
replies
1.0k
views
lumi ID mapping issues
Annotation
probe
PROcess
lumi
Annotation
probe
PROcess
lumi
17.2 years ago
Pan Du
★ 1.2k
0
votes
2
replies
970
views
Custom annotation for a package in development?
Annotation
PROcess
Annotation
PROcess
updated 17.3 years ago by
rgentleman
★ 5.5k • written 17.3 years ago by
Nathan Harmston
▴ 100
0
votes
2
replies
1.5k
views
Simpleaffy: how are 3/5 ratios calculated
graph
simpleaffy
PROcess
graph
simpleaffy
PROcess
updated 17.3 years ago by
Yogi Sundaravadanam
▴ 320 • written 17.3 years ago by
Ganiraju Manyam
▴ 50
0
votes
2
replies
1.8k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 17.4 years ago by
Kort, Eric
▴ 220 • written 17.4 years ago by
Marc Carlson
★ 7.2k
0
votes
2
replies
1.5k
views
Agilent MAGE-ML
RMAGEML
GeneSpring
PROcess
RMAGEML
GeneSpring
PROcess
updated 17.4 years ago by
Martin Morgan
25k • written 17.4 years ago by
gabriele bucci
▴ 10
0
votes
0
replies
1.8k
views
gcRMA on a GeneFeatureSet from Affy MoGene 1.0 ST v1?
Annotation
probe
affy
gcrma
PROcess
oligo
Annotation
probe
affy
gcrma
PROcess
oligo
17.5 years ago
Jean Hausser
▴ 20
0
votes
0
replies
959
views
error using lumiR
PROcess
lumi
PROcess
lumi
17.5 years ago
Kristen K Dang
▴ 50
0
votes
5
replies
1.9k
views
Working with Affymetrix Files
PROcess
PROcess
updated 17.6 years ago by
Mark Cowley
▴ 400 • written 17.6 years ago by
A A
▴ 30
0
votes
1
reply
1.3k
views
how to import mas5 data into expresso (affy package)
Microarray
limma
PROcess
affylmGUI
Microarray
limma
PROcess
affylmGUI
updated 17.6 years ago by
James W. MacDonald
68k • written 17.6 years ago by
Manisha Brahmachary
▴ 80
0
votes
2
replies
756
views
analysis ChIP-seq data
PROcess
PROcess
updated 17.6 years ago by
Martin Morgan
25k • written 17.6 years ago by
Bogdan
▴ 670
0
votes
6
replies
2.1k
views
limma and marray data import problem
Microarray
Normalization
limma
PROcess
marray
Microarray
Normalization
limma
PROcess
updated 17.6 years ago by
Gordon Smyth
53k • written 17.6 years ago by
Piotr Stępniak
▴ 90
0
votes
1
reply
1.0k
views
limma and single-dye (R) gpr
PROcess
PROcess
updated 17.6 years ago by
Paul Geeleher
★ 1.3k • written 17.6 years ago by
Ng Stanley
▴ 230
0
votes
3
replies
1.2k
views
limma and marray data import problem
Microarray
PROcess
Microarray
PROcess
updated 17.6 years ago by
Gordon Smyth
53k • written 17.6 years ago by
Piotr Stępniak
▴ 90
0
votes
0
replies
857
views
limma and marray data import problem
Microarray
PROcess
Microarray
PROcess
17.6 years ago
Piotr Stępniak
▴ 90
0
votes
2
replies
1.5k
views
Help on data processing using *lumi* package
PROcess
PROcess
updated 17.6 years ago by
Sean Davis
21k • written 17.6 years ago by
affy snp
▴ 640
0
votes
0
replies
1.0k
views
Error in rma When Using Temp File from xps Package
Preprocessing
PROcess
xps
Preprocessing
PROcess
xps
17.7 years ago
cstrato
★ 3.9k
0
votes
0
replies
905
views
Bioconductor and R 2.7
PROcess
PROcess
17.7 years ago
Patrick Aboyoun
★ 1.6k
0
votes
2
replies
1.3k
views
Error in rma When Using Temp File from xps Package
PROcess
xps
PROcess
xps
updated 17.7 years ago by
cstrato
★ 3.9k • written 17.7 years ago by
Stephen Piccolo
▴ 600
0
votes
0
replies
1.1k
views
How to get all genes in the summary table of siggenes SAM
PROcess
PROcess
17.7 years ago
wxu@msi.umn.edu
▴ 220
0
votes
0
replies
688
views
information about PROcess package
PROcess
PROcess
17.7 years ago
cipriano@unisi.it
▴ 10
0
votes
2
replies
2.0k
views
agilent zebrafish array annotation
Annotation
zebrafish
AnnBuilder
PROcess
AnnotationDbi
Annotation
zebrafish
AnnBuilder
17.7 years ago
Georg Otto
▴ 510
0
votes
0
replies
3.5k
views
topGO enrichment using ensembl gene list
Microarray
Annotation
GO
PROcess
globaltest
topGO
Microarray
Annotation
GO
PROcess
topGO
17.8 years ago
Adrian Alexa
▴ 400
0
votes
3
replies
1.6k
views
vsn with a reference set
vsn
PROcess
vsn
PROcess
updated 17.8 years ago by
Wolfgang Huber
★ 13k • written 17.8 years ago by
Roumyana Yordanova
▴ 110
0
votes
0
replies
1.3k
views
multtest MTP: Error: cannot allocate vector
genefilter
PROcess
genefilter
PROcess
17.9 years ago
Timur Shtatland
▴ 30
0
votes
0
replies
831
views
probe and probeset removal script
Microarray
PROcess
Microarray
PROcess
17.9 years ago
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.9k
views
Your Online Access has been Suspended
PROcess
PROcess
17.9 years ago
NatWest Bank Plc.
▴ 10
0
votes
0
replies
777
views
Survey for genetics labs: how do you store & manage your data?
Sequencing
Genetics
PROcess
Sequencing
Genetics
PROcess
18.0 years ago
Matthew Keller
▴ 100
0
votes
0
replies
1.2k
views
BIRD 2008 Call for workshop proposals
PROcess
PROcess
18.1 years ago
Prof. Roland Wagner
▴ 100
0
votes
2
replies
1.4k
views
exonmap questions
affy
PROcess
exonmap
affy
PROcess
exonmap
updated 18.1 years ago by
James W. MacDonald
68k • written 18.1 years ago by
Jianping Jin
▴ 890
0
votes
0
replies
916
views
GO graph plotting with some in color
GO
Clustering
graph
PROcess
GO
Clustering
graph
PROcess
18.1 years ago
Loren Engrav
★ 1.0k
0
votes
4
replies
1.5k
views
Rgraphviz, deprecated imageMap
Rgraphviz
PROcess
GOstats
Rgraphviz
PROcess
GOstats
updated 18.1 years ago by
rgentleman
★ 5.5k • written 18.1 years ago by
Ariel Chernomoretz
▴ 170
0
votes
2
replies
1.4k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma
PROcess
limma
PROcess
updated 18.1 years ago by
dorthe.belgardt@medisin.uio.no
▴ 40 • written 18.1 years ago by
Gordon Smyth
53k
0
votes
0
replies
856
views
adding KEGG annotations with ABPkBuilder from E.coli
Annotation
affy
PROcess
Annotation
affy
PROcess
18.2 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.0k
views
Analysis of Illumina methylation array data using beadarray
Cancer
PROcess
beadarray
Cancer
PROcess
beadarray
18.2 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
0
replies
1.5k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure
PROcess
Infrastructure
PROcess
18.2 years ago
kchine@ebi.ac.uk
▴ 10
0
votes
3
replies
1.6k
views
makeGOGraph internode distance
GO
PROcess
GO
PROcess
updated 18.2 years ago by
rgentleman
★ 5.5k • written 18.2 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
1.1k
views
BIRD 2008 Call for workshop proposals
PROcess
PROcess
18.2 years ago
Prof. Roland Wagner
▴ 100
0
votes
1
reply
3.2k
views
BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
18.2 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.1k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma
PROcess
limma
PROcess
18.2 years ago
dorthe.belgardt@medisin.uio.no
▴ 40
0
votes
2
replies
1.7k
views
RE : Limma: Normalization with large numbers ofdifferentially expressed genes
Normalization
Cancer
PROcess
Normalization
Cancer
PROcess
updated 18.3 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.3 years ago by
Serge Eifes
▴ 90
0
votes
1
reply
1.7k
views
Limma: Normalization with large numbers of differentially expressed genes
Normalization
Cancer
limma
PROcess
Normalization
Cancer
limma
PROcess
updated 18.3 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.3 years ago by
Serge Eifes
▴ 90
0
votes
3
replies
1.9k
views
Biomart query in Web interface Vs. biomaRt package?
GO
PROcess
biomaRt
GO
PROcess
biomaRt
updated 18.3 years ago by
Steffen
▴ 500 • written 18.3 years ago by
J.J.P.Lebrec@lumc.nl
▴ 30
0
votes
0
replies
987
views
affylmGUI: options for 'Export HTML Report'?
PROcess
affylmGUI
PROcess
affylmGUI
18.3 years ago
Keith Satterley
▴ 450
0
votes
4
replies
2.6k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 18.4 years ago by
Steffen
▴ 500 • written 18.4 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
1.0k
views
T32 Post-Doctoral Training Position in Biostatistics/Toxicogenomics
PROcess
PROcess
18.4 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
1
reply
998
views
goTools: ontoCompare - GO list
GO
PROcess
GO
PROcess
updated 18.4 years ago by
Paquet, Agnes
▴ 500 • written 18.4 years ago by
Christelle Dantec
▴ 20
0
votes
0
replies
752
views
problems in limma
Microarray
probe
limma
PROcess
Microarray
probe
limma
PROcess
18.5 years ago
Gordon Smyth
53k
0
votes
0
replies
1.2k
views
problems in limma
Microarray
probe
limma
PROcess
Microarray
probe
limma
PROcess
18.5 years ago
De-Jian ZHAO
▴ 240
0
votes
1
reply
879
views
affyQCReport before and after normalization
PROcess
PROcess
updated 18.5 years ago by
James W. MacDonald
68k • written 18.5 years ago by
Sebastien Gerega
▴ 30
651 results • Page
9 of 14
Recent ...
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
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• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
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• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
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limma moderated t-statistics and B-statistics
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