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KEGG pathway layout/rendering
Pathways graph PROcess Pathways graph PROcess
17.2 years ago Sim, Fraser ▴ 350
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lumi ID mapping issues
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17.2 years ago Pan Du ★ 1.2k
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2
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970
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Custom annotation for a package in development?
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updated 17.3 years ago by ★ 5.5k • written 17.3 years ago by ▴ 100
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2
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1.5k
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Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 17.3 years ago by ▴ 320 • written 17.3 years ago by ▴ 50
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2
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1.8k
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GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 17.4 years ago by ▴ 220 • written 17.4 years ago by ★ 7.2k
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2
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1.5k
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Agilent MAGE-ML
RMAGEML GeneSpring PROcess RMAGEML GeneSpring PROcess
updated 17.4 years ago by 25k • written 17.4 years ago by ▴ 10
0
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1.8k
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gcRMA on a GeneFeatureSet from Affy MoGene 1.0 ST v1?
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17.5 years ago Jean Hausser ▴ 20
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959
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error using lumiR
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17.5 years ago Kristen K Dang ▴ 50
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5
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Working with Affymetrix Files
PROcess PROcess
updated 17.6 years ago by ▴ 400 • written 17.6 years ago by ▴ 30
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1
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1.3k
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how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 80
0
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2
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756
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analysis ChIP-seq data
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updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 670
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6
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2.1k
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limma and marray data import problem
Microarray Normalization limma PROcess marray Microarray Normalization limma PROcess
updated 17.6 years ago by 53k • written 17.6 years ago by ▴ 90
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1
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1.0k
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limma and single-dye (R) gpr
PROcess PROcess
updated 17.6 years ago by ★ 1.3k • written 17.6 years ago by ▴ 230
0
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3
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1.2k
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limma and marray data import problem
Microarray PROcess Microarray PROcess
updated 17.6 years ago by 53k • written 17.6 years ago by ▴ 90
0
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0
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857
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limma and marray data import problem
Microarray PROcess Microarray PROcess
17.6 years ago Piotr Stępniak ▴ 90
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2
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1.5k
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Help on data processing using *lumi* package
PROcess PROcess
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 640
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1.0k
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Error in rma When Using Temp File from xps Package
Preprocessing PROcess xps Preprocessing PROcess xps
17.7 years ago cstrato ★ 3.9k
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905
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Bioconductor and R 2.7
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17.7 years ago Patrick Aboyoun ★ 1.6k
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2
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1.3k
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Error in rma When Using Temp File from xps Package
PROcess xps PROcess xps
updated 17.7 years ago by ★ 3.9k • written 17.7 years ago by ▴ 600
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0
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1.1k
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How to get all genes in the summary table of siggenes SAM
PROcess PROcess
17.7 years ago wxu@msi.umn.edu ▴ 220
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0
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688
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information about PROcess package
PROcess PROcess
17.7 years ago cipriano@unisi.it ▴ 10
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2
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2.0k
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agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
17.7 years ago Georg Otto ▴ 510
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3.5k
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topGO enrichment using ensembl gene list
Microarray Annotation GO PROcess globaltest topGO Microarray Annotation GO PROcess topGO
17.8 years ago Adrian Alexa ▴ 400
0
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3
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1.6k
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vsn with a reference set
vsn PROcess vsn PROcess
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 110
0
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0
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1.3k
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multtest MTP: Error: cannot allocate vector
genefilter PROcess genefilter PROcess
17.9 years ago Timur Shtatland ▴ 30
0
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831
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probe and probeset removal script
Microarray PROcess Microarray PROcess
17.9 years ago Jenny Drnevich ★ 2.2k
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1.9k
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Your Online Access has been Suspended
PROcess PROcess
17.9 years ago NatWest Bank Plc. ▴ 10
0
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0
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777
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Survey for genetics labs: how do you store & manage your data?
Sequencing Genetics PROcess Sequencing Genetics PROcess
18.0 years ago Matthew Keller ▴ 100
0
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0
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BIRD 2008 Call for workshop proposals
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18.1 years ago Prof. Roland Wagner ▴ 100
0
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2
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1.4k
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exonmap questions
affy PROcess exonmap affy PROcess exonmap
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 890
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916
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GO graph plotting with some in color
GO Clustering graph PROcess GO Clustering graph PROcess
18.1 years ago Loren Engrav ★ 1.0k
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4
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1.5k
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Rgraphviz, deprecated imageMap
Rgraphviz PROcess GOstats Rgraphviz PROcess GOstats
updated 18.1 years ago by ★ 5.5k • written 18.1 years ago by ▴ 170
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2
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1.4k
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Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma PROcess limma PROcess
updated 18.1 years ago by ▴ 40 • written 18.1 years ago by 53k
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0
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856
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adding KEGG annotations with ABPkBuilder from E.coli
Annotation affy PROcess Annotation affy PROcess
18.2 years ago Robert Castelo ★ 3.4k
0
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0
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1.0k
views
Analysis of Illumina methylation array data using beadarray
Cancer PROcess beadarray Cancer PROcess beadarray
18.2 years ago Kellie J. Archer, Ph.D. ▴ 120
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0
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1.5k
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biocep project - R for the Web and the Virtual R Workbench
Infrastructure PROcess Infrastructure PROcess
18.2 years ago kchine@ebi.ac.uk ▴ 10
0
votes
3
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1.6k
views
makeGOGraph internode distance
GO PROcess GO PROcess
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ★ 1.0k
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0
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1.1k
views
BIRD 2008 Call for workshop proposals
PROcess PROcess
18.2 years ago Prof. Roland Wagner ▴ 100
0
votes
1
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3.2k
views
BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
18.2 years ago Prof. Roland Wagner ▴ 100
0
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0
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1.1k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma PROcess limma PROcess
18.2 years ago dorthe.belgardt@medisin.uio.no ▴ 40
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2
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1.7k
views
RE : Limma: Normalization with large numbers ofdifferentially expressed genes
Normalization Cancer PROcess Normalization Cancer PROcess
updated 18.3 years ago by ★ 1.9k • written 18.3 years ago by ▴ 90
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1
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1.7k
views
Limma: Normalization with large numbers of differentially expressed genes
Normalization Cancer limma PROcess Normalization Cancer limma PROcess
updated 18.3 years ago by ★ 1.9k • written 18.3 years ago by ▴ 90
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3
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1.9k
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Biomart query in Web interface Vs. biomaRt package?
GO PROcess biomaRt GO PROcess biomaRt
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 30
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987
views
affylmGUI: options for 'Export HTML Report'?
PROcess affylmGUI PROcess affylmGUI
18.3 years ago Keith Satterley ▴ 450
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votes
4
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2.6k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 18.4 years ago by ▴ 500 • written 18.4 years ago by ★ 1.4k
0
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0
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1.0k
views
T32 Post-Doctoral Training Position in Biostatistics/Toxicogenomics
PROcess PROcess
18.4 years ago Kellie J. Archer, Ph.D. ▴ 120
0
votes
1
reply
998
views
goTools: ontoCompare - GO list
GO PROcess GO PROcess
updated 18.4 years ago by ▴ 500 • written 18.4 years ago by ▴ 20
0
votes
0
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752
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problems in limma
Microarray probe limma PROcess Microarray probe limma PROcess
18.5 years ago Gordon Smyth 53k
0
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0
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1.2k
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problems in limma
Microarray probe limma PROcess Microarray probe limma PROcess
18.5 years ago De-Jian ZHAO ▴ 240
0
votes
1
reply
879
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affyQCReport before and after normalization
PROcess PROcess
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 30
651 results • Page 9 of 14
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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