Showing : process • reset
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Announcement: Deadline for new package submission
PROcess PROcess
16.3 years ago Nishant Gopalakrishnan ▴ 340
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1.6k
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GO.db and Gostats question
Annotation GO PROcess GOstats Annotation GO PROcess GOstats
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 570
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read coverage per transcript for RNASeq
RNASeq Coverage PROcess ShortRead RNASeq Coverage PROcess ShortRead
updated 16.4 years ago by 25k • written 16.4 years ago by ▴ 40
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question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
16.5 years ago Oana VIGY ▴ 80
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Filtering genes in illumina datasets obtained with GEOquery
PROcess PROcess
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 80
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biomaRt does not like flies
PROcess biomaRt PROcess biomaRt
16.5 years ago Wolfgang Huber ★ 13k
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build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
16.5 years ago Massimo Pinto ▴ 390
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1.0k
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To bioinformatics and maanova expert
PROcess maanova PROcess maanova
16.5 years ago Loren Engrav ★ 1.0k
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1.6k
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2 color Nimblegen data and limma
limma PROcess limma PROcess
updated 16.5 years ago by ★ 4.3k • written 16.5 years ago by ▴ 750
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1.2k
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rtracklayer <-> UCSC interaction currently broken
PROcess rtracklayer PROcess rtracklayer
16.5 years ago Michael Lawrence ▴ 620
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biomaRt does not like flies
PROcess biomaRt PROcess biomaRt
16.6 years ago Simon Anders ▴ 150
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ANNOUNCEMENT: 20% discount on the most recent bioconductor/R books from Chapman & Hall/CRC!
Cancer PROcess Cancer PROcess
16.6 years ago Calver, Rob ▴ 10
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You have 1 unread message
PROcess PROcess
16.6 years ago HSBC Online Banking ▴ 10
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2.0k
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Affy Gene ST arrays with "oligo"
BiocViews Annotation Organism affy PROcess biocViews BiocViews BiocViews Annotation affy
updated 16.6 years ago by ★ 3.9k • written 16.6 years ago by ▴ 830
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Congratulations!
PROcess PROcess
16.6 years ago Commonwealth Bank of Australia ▴ 40
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Simple beadarraySNP analysis
SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer
16.6 years ago Dmitri Mouradov ▴ 20
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2.6k
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quantile robust and RMA in xps
Normalization PROcess xps Normalization PROcess xps
updated 16.6 years ago by ★ 3.9k • written 16.7 years ago by ▴ 510
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Upgrading R
PROcess PROcess
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 70
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[Bioc] Is Nimblegen Training worth it?
PROcess PROcess
16.7 years ago Thomas Hampton ▴ 750
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Question regarding Affy SNP 5.0/BI_SNP arrays
SNP Annotation cdf affy PROcess oligo SNP Annotation cdf affy PROcess oligo
updated 16.7 years ago by ▴ 40 • written 16.7 years ago by ▴ 120
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1.3k
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MEDME for MeDIP on Affymetrix promoter arrays
PROcess MEDME PROcess MEDME
updated 16.8 years ago by ▴ 200 • written 16.8 years ago by ▴ 330
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RMA implemented in oligo package vs affy package
ExperimentData cdf affy PROcess oligo ExperimentData cdf affy PROcess oligo
16.8 years ago heyi xiao ▴ 360
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1.4k
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justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 16.8 years ago by ▴ 20 • written 16.9 years ago by 25k
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reply
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helps about exporting with limma
limma PROcess limma PROcess
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 10
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4
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1.5k
views
Possible bug in ShortRead pileup function
PROcess PROcess
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 100
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1.2k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
16.8 years ago Martin Morgan 25k
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3
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Curious file size issues
Annotation Cancer PROcess Annotation Cancer PROcess
updated 16.8 years ago by 6.7k • written 16.8 years ago by ★ 1.9k
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1.2k
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Announcement: Deadline for new package submission
PROcess PROcess
16.9 years ago Nishant Gopalakrishnan ▴ 340
1
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RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
16.9 years ago Nishant Gopalakrishnan ▴ 340
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justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
16.9 years ago Jacek Nowak ▴ 20
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qPCR NEWS - February 2009
qPCR Normalization PROcess microRNA qPCR Normalization PROcess microRNA
16.9 years ago qPCR Platform - the reference in real-t… ▴ 170
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652
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Are you Lost on the Marketing Concept -
PROcess PROcess
16.9 years ago Leslie Jolliff ▴ 10
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1.5k
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Repost of Error Message: Error in dim(data)<-dim: attempt to set an atrribute on NULL
Cancer PROcess Cancer PROcess
updated 16.9 years ago by 68k • written 16.9 years ago by 25k
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getSeq human genomic sequences
Annotation Cancer BSgenome PROcess GLAD BSgenome IRanges Annotation Cancer BSgenome GLAD
17.0 years ago Hervé Pagès 16k
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Newbie Illumina Probe Annotation (beadarray) Problem
Annotation probe PROcess beadarray Annotation probe PROcess beadarray
updated 17.0 years ago by ▴ 40 • written 17.0 years ago by ▴ 10
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1.3k
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Select an affybatch subset prior to normalization
Normalization cdf PROcess Normalization cdf PROcess
updated 17.0 years ago by ★ 2.0k • written 17.0 years ago by ▴ 840
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Problems with EBImage installation
PROcess EBImage PROcess EBImage
updated 17.0 years ago by ▴ 30 • written 17.0 years ago by ▴ 30
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Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
17.1 years ago qPCR Platform - the reference in real-t… ▴ 170
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Bioc-devel Digest, Vol 57, Issue 4
Annotation Normalization GO affy PROcess Annotation Normalization GO affy PROcess
17.1 years ago rcaloger ▴ 500
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1.0k
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biomaRt difference from biomart.org?
PROcess biomaRt PROcess biomaRt
updated 17.1 years ago by ▴ 660 • written 17.1 years ago by ▴ 30
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qPCR NEWS - December 2008
qPCR graph PROcess microRNA qPCR graph PROcess microRNA
17.1 years ago qPCR Platform - the reference in real-t… ▴ 170
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3
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1.4k
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issue with lmFit in limma
limma PROcess limma PROcess
updated 17.1 years ago by 68k • written 17.1 years ago by ▴ 60
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0
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1.5k
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Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Annotation Normalization probe affy PROcess oligo exonmap Annotation Normalization probe
17.1 years ago Alexander C Cambon ▴ 30
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2.1k
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Custom CDF files
Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess
updated 17.1 years ago by ★ 1.1k • written 17.1 years ago by ▴ 20
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1.5k
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Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
GUI Cancer Breast hgu133plus2 PROcess rtracklayer microRNA GUI Cancer Breast hgu133plus2
17.1 years ago Steven McKinney ▴ 310
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877
views
Custom CDF files
Annotation GO cdf affy PROcess Annotation GO cdf affy PROcess
17.1 years ago Edward Oakeley ▴ 20
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0
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1.5k
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Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
17.2 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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1
reply
1.2k
views
Oligo:read.xysfiles fails
PROcess oligo PROcess oligo
17.2 years ago Mikko Arvas ▴ 90
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2
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1.4k
views
Does old workspace work?
Regression probe gcrma PROcess maanova Regression probe gcrma PROcess maanova
updated 17.2 years ago by ★ 6.5k • written 17.2 years ago by ★ 1.0k
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0
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1.1k
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adding KEGG annotations with ABPkBuilder from E.coli
Annotation annotate AnnBuilder PROcess Category Annotation annotate AnnBuilder PROcess
17.2 years ago Marc Carlson ★ 7.2k
651 results • Page 8 of 14
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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