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processamplicons
•
reset
1
vote
5
replies
1.1k
views
trying to change length of barcode
processamplicons
edger
barcode
8.0 years ago
lucia.caceres
• 0
0
votes
2
replies
874
views
Error in processAmplicons "there are duplicate hairpin sequences"
processamplicons
8.0 years ago
lucia.caceres
• 0
4
votes
4
replies
1.6k
views
edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR
processamplicons
shrna
updated 8.4 years ago by
thomas.leete
• 0 • written 8.6 years ago by
Anne Deslattes Mays
▴ 10
2
votes
18
replies
3.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger
processamplicons
rstudio
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
thomas.leete
• 0
0
votes
2
replies
1.2k
views
Error in processAmplicons "hairpin sequence length not with specified length"
processamplicons
updated 8.0 years ago by
Matthew Ritchie
▴ 1000 • written 8.0 years ago by
lucia.caceres
• 0
0
votes
1
reply
1.4k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.0 years ago by
sdalin
• 0 • written 7.1 years ago by
neggersjasper
• 0
0
votes
2
replies
1.5k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 14 months ago by
hyejo
• 0 • written 6.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
838
views
ProcessAmplicons using very little memory on big job?
edgeR
processamplicons
memory problem
5.8 years ago
sdalin
• 0
0
votes
0
replies
693
views
processAmplicons to match sequences 1 or 2 bases shorter than guides?
processamplicons
edgeR
updated 6.0 years ago by
shepherl
3.9k • written 6.0 years ago by
sdalin
• 0
0
votes
0
replies
790
views
using the edgeR for sgRNA workflow with my own data
edger
sgrna
processamplicons
6.1 years ago
Assa Yeroslaviz
★ 1.5k
10 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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